Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0543 ATGGGGAGTATGAGTGACTCAGACCGAAAACGACGTCACTTTAGCTCCTTGTCCCCAACACCTGCAGCTGCTACTGCCAAGAAGCTACCCTTCTTGCCTGTTTCTGAAGACAAAAAGCTTGACATTGTTGTACTTCAGTATCAAAATCAAAAGCTTACACAAAAATTAGAAACTCAGAAGTTAGAGTATGCAGCTCTTGACAATAGGTTTACTCAACTGAAGGAGAGGCAAAAGTCATATGATCCCACTTTAGCAGTGGTCAAGAAATCTTGGGAGCAGATGGTCAATGATTTGGAGTTGTGTTCTGAACATATGAGAGAGTCAAGTGGCAAATCAAATTATAGATTTGTATCAATCATGGAAGATGGTGGTCCATCTACTGTTCAGGATGTGTTTCTTAGCCGTCTAATGCAAACTGGTGCAACTGAATGTGCAACTTCGTATAACTTTGCAAACCAGACTAAAGAACATCAAGAAATTATTACTGAAAAAGCTAGAAGTATTTTAAGAAATATGGCAACAACTGTTAATAATGTTTGGGTTCTGATGGATGGATTGCATACTGCATTACTGAAAAAGCTTCCTGTGGATGTTTTTTGTAGGCAGAAATTGTCCTCTGATCTAGATGTGAAAGTTAAAAACTTGAGATTGGAATTCAGCGAACTTCATTCAAAGCACAAGTCTTTATCAAGTGAATTCCAAATTCAGCGAGATATTGATGCAAAAAATAAAGCTGACCTTGAAAGACTGAAAGGGGAACTGGCTAGCGCTGTTGCAGAGTTAGAAGAAAGCAATTACAAACTTGCAACTCTTAAGGCTGAGAGAGATGCTGCAAAAGGGGCAGTTCTCCCAGTCTTAAATGTTGGAAGTACACACATTCCTAGTGATAAGATCAGAGATAAGCAAAAGGACTTACAAGATATGGAATCTACTTTGAAGGAGCTATTGGACCAAAGTTCTACTCGGTTAATTGAACTGAAAAGTCTTCATGAGGAAAGAATAAGAATATTGCAGCAGTTGTGTGATCTACAGAACACTTTGAAGAATTTCAAGTGTATCACTTCATCCCATGCTTACCAATTGGTTAAAGATCAGATAGAAAAGTCAAAATCAGATGTTCTGGAGTATCAAGCCTTATATGAGAAACTACAGGTTGAGAAGGATAATCTTACTTGGAGGGAGCGGGAGTGGTACATTAAAAATGATTTAGCAGATATTTTTCAAAGATCTGTAACAGTTTCAGATTTTAGAGTGGCTCATCTACACTCTGAGATACAGAAAAAGATAGAGGAAGGAAATATGATTGAAAATAAGCTGAAAGAAGAAGCAAGAGAACCAGGAAGGAAACAGATTATTGCTGAATTCAAATCTCTGGTTTCTTCATTTCCTGAGGAAATGGGGTCTATGCAGAGCCAACTAAGAAAATATAAAGAATCAGCTTCAGATATCCATTCATTGCGTGCAGATGTGCAGTCTGTTTCTAGTATTCTTGACAGGAAGGTAAAAGAATGTGATGCATTTTCTGTTAGGTCTGCAAGTCAACTTGCTGAGATAGAGAGGCTGCTTGGTGTGTTTCAAGATTTGAGAGAAAGCGAACAGGACTTGAAGTTGATGTTAGAAATGTTTAGACGCGAGTCCATTGATTCAAGGGATGTCATGGATGCTCGGGAAGCAGAATATAGAGCATGGGCACATGTTCAAAGTTTAAAATCATCACTCGATGAGCACAACTTGGAACTTCGAGTTAAGAAAGCCAATGAAGCAGAGGCCAGATCACAACAAAAGCTAGCTGCTGGTGAAGCTGAGATTGCGGACATGAGACAGAAATTAGAAGATTCTAAAAGGAAAATGTGTGATCTGTCTGATATCTTGAAGTCTAAAAACAAACAAAATGAGAACTACTTGTCTGAAATAGAGAGTATTGGACAAGCATATGATGACATGCAAACTCAAAACCAACATCTGCTGCAGCAAATTACTGAAAGAGATGATTACAATATTAAGCTTGTTTTGGAGGGTGTAAGGGCAAGGCAGAAGCAGGATTCTTTGCTCATGGAGAAGCGGGTAATTGAACAAGATATGCAGCAAGCGAACACATCCCTGAACTTATATGATATTAAAGCTTCAAGAATTGAAGACCAGTTGAAGTTTTGTTCGGATCAGCTTCAAAGACTTGCAGAGGATAAGCTTCAATGTTCTGTCACTTCAGAAAATACACAAAGAAGGCTGTCTGATATTAGAAGACAAACTCAACAGATTAGGGATACAGTGGTCGAATTGCAATCAAAAATTGGTAGTAATAGGGTGACACGAATGGAGTTACGAGTAGAACTTGAGAAAGAAAGGTTTGCCAAGAAAAGAACTGAGGAGGATTTGGAGGTTGCTAGGAGAAAGTTTTCACGCCTTAAAGAACAGAATGAGGGCTCTTCAATAAATGAAAAGCTTCAACAAGAACTTGAAGAATACAGGGAAATTATCAAGTGCAGTATCTGTCAAGATAGGGCAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCTTCTCATGTATCCAGAAAGTTGCTGGGAGTAGGCATCGGAAGTGTCCGCAGTGTGCTACAAGCTTTGGGGTTAATGATGTGAAGCCTGTTTATTTGTAA 2643 0.3874 MGSMSDSDRKRRHFSSLSPTPAAATAKKLPFLPVSEDKKLDIVVLQYQNQKLTQKLETQKLEYAALDNRFTQLKERQKSYDPTLAVVKKSWEQMVNDLELCSEHMRESSGKSNYRFVSIMEDGGPSTVQDVFLSRLMQTGATECATSYNFANQTKEHQEIITEKARSILRNMATTVNNVWVLMDGLHTALLKKLPVDVFCRQKLSSDLDVKVKNLRLEFSELHSKHKSLSSEFQIQRDIDAKNKADLERLKGELASAVAELEESNYKLATLKAERDAAKGAVLPVLNVGSTHIPSDKIRDKQKDLQDMESTLKELLDQSSTRLIELKSLHEERIRILQQLCDLQNTLKNFKCITSSHAYQLVKDQIEKSKSDVLEYQALYEKLQVEKDNLTWREREWYIKNDLADIFQRSVTVSDFRVAHLHSEIQKKIEEGNMIENKLKEEAREPGRKQIIAEFKSLVSSFPEEMGSMQSQLRKYKESASDIHSLRADVQSVSSILDRKVKECDAFSVRSASQLAEIERLLGVFQDLRESEQDLKLMLEMFRRESIDSRDVMDAREAEYRAWAHVQSLKSSLDEHNLELRVKKANEAEARSQQKLAAGEAEIADMRQKLEDSKRKMCDLSDILKSKNKQNENYLSEIESIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLLMEKRVIEQDMQQANTSLNLYDIKASRIEDQLKFCSDQLQRLAEDKLQCSVTSENTQRRLSDIRRQTQQIRDTVVELQSKIGSNRVTRMELRVELEKERFAKKRTEEDLEVARRKFSRLKEQNEGSSINEKLQQELEEYREIIKCSICQDRAKEVVITKCYHLFCFSCIQKVAGSRHRKCPQCATSFGVNDVKPVYL* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0543 880 Coils Coil 596 616 - -
Vra4g0543 880 MobiDBLite consensus disorder prediction 1 15 - -
Vra4g0543 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 880 IPR013083 -
Vra4g0543 880 PANTHER RING FINGER PROTEIN-RELATED 1 880 IPR013956 GO:0004842|GO:0010390
Vra4g0543 880 Coils Coil 812 832 - -
Vra4g0543 880 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 1 880 - -
Vra4g0543 880 SUPERFAMILY RING/U-box 820 879 - -
Vra4g0543 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Vra4g0543 880 Coils Coil 708 728 - -
Vra4g0543 880 Coils Coil 366 386 - -
Vra4g0543 880 Coils Coil 298 318 - -
Vra4g0543 880 CDD RING-HC_BRE1_like 826 867 - -
Vra4g0543 880 Coils Coil 244 274 - -
Vra4g0543 880 Coils Coil 566 586 - -
Vra4g0543 880 Coils Coil 778 805 - -
Vra4g0543 880 MobiDBLite consensus disorder prediction 1 22 - -
Vra4g0543 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Vra4g0543 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 868 - -
Vra4g0543 880 SMART ring_2 828 866 IPR001841 -
Vra4g0543 880 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0543 Vra-Chr4 10393023 10420019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0543 828 879 C3H Transcription Factor Family AT2G42030 41.509 1.63e-08 55.8