Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0540 ATGAATCTTAGCTATGAACAGAAACTTCAAGTTGTTTCCAAAATCATACTGGACGATGAGGCACGCGCCGGCGACGCGCCGCCGTGTCAGGAAGAGCTCGGGCTCAGGGCGACTCTCAAGCCGCACCAGGTGGAAGGGATTTCCTGGCTAATACGGAGGTACAAACTCGGCGTCAACGTTGTCCTCGGGGATGAGATGGGACTGGGCAAGACTTTGCAAGCTATCTCCTTTTTAAGCTATTTAAAAGTGTGCCGGTTGTCTGAAGGGCCCTTTTTGGTTATATGTCCTCTAAGTGTGACTGAGGGTTGGGTGTCAGAGATAGTTAAATTTACCCCCAAGCTAACAGTGTTCAAATATGTTGGTGATAAAGAAAATAGGCGCAATCTACGCATGAAAATACATGAACATGTAGCAAGACAGTCATCAACAATGAATCAGGTCTTGTTGCCTTTTGATGTGCTATTAACTTCATATGACATTGCACTGGTGGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATTGATGAAGCTCAGAGACTTAAAAATCCGTCTAGTGTTTTATTTAATGTTCTCAAAGATCGGTATATAATGCCAAGACGATTGCTGATGACTGGCACACCTATTCAAAATAATCTTTCTGAACTGTGGGCATTGATGTATTTTTGCATGCCTTCTGTCTTTGGTACACTGGATCAGTTCCTTTCTACGTTTAAGGACATCAGTGATCTTTCATCAGTTCATGATGCTCCAAAGGTAAAGGAGAGGCTTAATATTTTAAGAAGTGTATTGGGAGCCTTTATGCTTCGACGTACCAAGTCAAAGCTTATCGAGTGTGGAAATTTAGTTCTACCACCTCTTACTGAGACAACCGTGTTAGTTCCCCTTGTCATCTTGCAGAAAAAGGTCTATATGTCAATATTGAGGAAAGAACTCCATAAGCTACTTGCATTATCATCTGGAACTTCAAATCCTCAGTCACTACAAAATATTGTGATACAGCTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATTGAGCCTGAACCTTATGAAGAAGGTGAACATCTAGTTCAGGCCAGTGGTAAACTACTTATTCTGGACCAACTTCTTCAGAAGTTACATTATTCTGGACACCGTGTTCTTCTTTTTGCTCAGATGACCCATACACTTGACATCTTGCAAGATTTTCTGGAGTTGCGAAAGTATTCGTATGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCTATAAGAAGTTTCAGTAGCTCATCAGCTACTTCAGGCTTGACTTCTGAAGCTGAACAAAATGGAGCATTTGTGTTTATGATCTCAACACGAGCAGGGGGAGTTGGTTTGAATCTTGTGGCTGCTGATACTGTTATATTCTATGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAACCATGTGTTGTGCATAAACCTTGTTACAGAGAAGACAGTGGAGGAAGTAATTATGAGGAGGGCAGAAAGAAAATTGCTTCTGAGTATCAATGTTACTGGTGATAACATGCTCAAACATGATGATGAAGAAACATCTGAAGTTGGAACTGGAGATTTGAAATCCATCATATTTGGTTTACGTATGTTAGATCCCACTGAGATTACTGACGCAAATCATAGGGATATGAACTTATCAGAAATTGGTGTTATGGCTGACAAGGTGCTTGCGTTGCGTGACAAACAAATACGGGATATGGATGATAGGAAATTTGAGGTCAATCCAAGAAACATTTTACAAGGTGATGATGTTAAGGAAGGAGGTACTACTTTTTCTCACGATCTTGGTCTTGATGAGGCTTCATATCTTTCTTGGGTTAACAAGTTTGAGGAAGTGTCTAAGTCAAGTTGCAACTCAATTATGGATTGGAGGAGCAAAAGAAACTCACAAGAGGAAAAGAGTCTAAAACTTGAGTCTGCAATGAAGAAGGCAGAGGAAAAGAAGCTATCCAGGTGGAAAGCTCTTGGATATCAATCATTGAATGTAAAATACCCTCTCACCCAAACAGACAATGATATTACATCAGCTACTGGGTCCGTTCATTTTGTGTATGGAGATTGTACAGCTCCATCAAATGTTTGTTCATCTGAACCAGCTATGATTTTCAGCTGTGTTGACACGTCTGGACATTGGGGCCACGGTGGAATGTTTGATGCACTGTCCAAACTTTCTACAAGCATTGGTGATGCATATGAACGGGCTTCTGAGCATGGGGATCTGCATCTTGGTGATCTGCATCTTATAAGGCTTGATGATGGTTGTCAAGAACAAGATATGACTGGAAATACTCCCAAGATGATTGCTTTAGCTGTGGTTCAATCATATAATCCAAGGCGCAAAATTCCACGCAGTGAAATCTCACTTCCCCATTTGGAAAGCTGCTTATCTAAGGCAGCATTCTCAGCAGCTCAGAATTCTGATATTATTATCGAAGATCAAGTTAAGGCTCTTTCTCACTTCCTAAACTCAATATAG 2556 0.4128 MNLSYEQKLQVVSKIILDDEARAGDAPPCQEELGLRATLKPHQVEGISWLIRRYKLGVNVVLGDEMGLGKTLQAISFLSYLKVCRLSEGPFLVICPLSVTEGWVSEIVKFTPKLTVFKYVGDKENRRNLRMKIHEHVARQSSTMNQVLLPFDVLLTSYDIALVDQDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLSSVHDAPKVKERLNILRSVLGAFMLRRTKSKLIECGNLVLPPLTETTVLVPLVILQKKVYMSILRKELHKLLALSSGTSNPQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSATSGLTSEAEQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEKTVEEVIMRRAERKLLLSINVTGDNMLKHDDEETSEVGTGDLKSIIFGLRMLDPTEITDANHRDMNLSEIGVMADKVLALRDKQIRDMDDRKFEVNPRNILQGDDVKEGGTTFSHDLGLDEASYLSWVNKFEEVSKSSCNSIMDWRSKRNSQEEKSLKLESAMKKAEEKKLSRWKALGYQSLNVKYPLTQTDNDITSATGSVHFVYGDCTAPSNVCSSEPAMIFSCVDTSGHWGHGGMFDALSKLSTSIGDAYERASEHGDLHLGDLHLIRLDDGCQEQDMTGNTPKMIALAVVQSYNPRRKIPRSEISLPHLESCLSKAAFSAAQNSDIIIEDQVKALSHFLNSI* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0540 851 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 834 - -
Vra4g0540 851 Gene3D - 13 284 IPR038718 -
Vra4g0540 851 SUPERFAMILY Macro domain-like 707 832 IPR043472 -
Vra4g0540 851 SMART ultradead3 35 237 IPR014001 -
Vra4g0540 851 SMART helicmild6 397 492 IPR001650 -
Vra4g0540 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 541 IPR027417 -
Vra4g0540 851 CDD SF2_C_SNF 360 503 - -
Vra4g0540 851 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 229 IPR014001 -
Vra4g0540 851 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 539 IPR001650 -
Vra4g0540 851 PANTHER HELICASE CHR10-RELATED 5 834 - -
Vra4g0540 851 Pfam Helicase conserved C-terminal domain 368 492 IPR001650 -
Vra4g0540 851 Pfam SNF2-related domain 57 347 IPR000330 GO:0005524|GO:0140658
Vra4g0540 851 Gene3D - 285 595 IPR027417 -
Vra4g0540 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 274 IPR027417 -
Vra4g0540 851 Gene3D Leucine Aminopeptidase, subunit E, domain 1 703 841 IPR043472 -
Vra4g0540 851 Coils Coil 654 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0540 Vra-Chr4 10333012 10362429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0540 19 551 RAD5 or RAD16-like Gene Family AT1G02670 25.955 1.51e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra4g0540 SNF2_N 6.9e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0540 K20092 - gmx:100797182 1348.57