Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0534 ATGTTGGATTACGAATGGAATTCATCAATGATACTCCTCGCCGGCAATGAAGTTGCCGACGGCGAACCCGACCAAACGCGCCGGCAAATTTTCGACCACAACTTTTCCATGTTAACTGACCCCATTCTACATGCCTCAACACCAACACCCACCACTGGTTTCTCGATTCACCACCCCTTCAACCCACCACCACAACAGCAGCAGCACCATCACAACCACCAGCAGCCCTTCTTCGACCCACGCGCCTTCCAAAGCGCGTCCACCGCTTCCTTCTCGCCACCACCTTCGGTGCTCTCACTTAACTCAATCCCACCTTTAGCTCCCTCCTACTGTGGGCTTGGGCCTGGCTCCGGGCTTGGGTTTCTGCTCATGTCCAAGTCTGAGGATGCGACTTCGCCCATTAACTTTGAGTGCTCTGGTCATGGTCTCGGGCCTGGACCCGGGCTTGGACTCAACCTCGGTGGTCGCACTTATTTTGCGGCTTCCAACGAAGACACCCTGGACAGATTCTACCGTTGCAAGACGGTGGAATCGGTTTCCACCGTGGCGTCAAATTTGCCACGCTGTCAAGCAGAAGGATGTAACACGGACCTTTCCGAAGCCAAGCACTACCACCGCCGTCACAAGGTGTGTGAGTTCCACTCCAAGGCCGCCACCGTCATTGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGATTCCATCTTCTTTCAGAATTTGACAATGGGAAACGGAGCTGCAGGAAGAGACTGGCAGATCACAATCGTCGCAGAAGAAAAACTCAAGACATTCACAAATCTCAGCCTTCTTTGGACAATGTTACATGGTCATCTTCTGAATCTGGAGCTCAATCTTCGTCATCAATGAAGGTGGAAGTGTCACCCCCAGATTATTTCCAGCAAAATAGAGGCACTTCGTCAACATCATCATCTGGGTCATTATTTTTCTCAAGTGGGGCCAATTTGCATGGCTAA 981 0.5219 MLDYEWNSSMILLAGNEVADGEPDQTRRQIFDHNFSMLTDPILHASTPTPTTGFSIHHPFNPPPQQQQHHHNHQQPFFDPRAFQSASTASFSPPPSVLSLNSIPPLAPSYCGLGPGSGLGFLLMSKSEDATSPINFECSGHGLGPGPGLGLNLGGRTYFAASNEDTLDRFYRCKTVESVSTVASNLPRCQAEGCNTDLSEAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQDIHKSQPSLDNVTWSSSESGAQSSSSMKVEVSPPDYFQQNRGTSSTSSSGSLFFSSGANLHG* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0534 326 MobiDBLite consensus disorder prediction 51 74 - -
Vra4g0534 326 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 147 300 - -
Vra4g0534 326 ProSiteProfiles Zinc finger SBP-type profile. 186 263 IPR004333 GO:0003677
Vra4g0534 326 SUPERFAMILY SBT domain 187 264 IPR036893 GO:0003677|GO:0005634
Vra4g0534 326 MobiDBLite consensus disorder prediction 269 326 - -
Vra4g0534 326 MobiDBLite consensus disorder prediction 253 326 - -
Vra4g0534 326 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 147 300 IPR044817 GO:0003677
Vra4g0534 326 Pfam SBP domain 189 262 IPR004333 GO:0003677
Vra4g0534 326 Gene3D - 184 250 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0534 Vra-Chr4 10177366 10179440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0534 1 236 SBP-box Gene Family AT1G02065 39.844 5.05e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra4g0534 SBP 6.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0534 - - var:108328505 537.339