Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0533 ATGGACTTCCCAGGGAACATCTTCTGCCTCTCCAACAGAGACCAAAATGGGAATACTAACGCCAACACTTTCGCCTGGGATTCATGGCAAACAACCACTTCTAATAATAACAACACCACTTCCACCTTCCTCAACGCTTTCAACGCCCCCGTCACTGCCCTCACCGCTCCGGAGGGCTCCGCCGCCAACCGCCCCGAGCCCGCGGGCCTCGCCAGCGCTCTCATGTTTCTCCCTCAAAACGCCGGCGTTTTGCGACACCGCCACCAGCACCAGCAGCATCCGTACGGAGGGGATGGCTCCCACGTGCACCCCGACCCCCACCTCATGTGCTTGAAGCTTGGGAAGAGGCATTACTTTGAGGACGCTAGTGGAAGTGGAACGGTCTCTTCTTCTTCTGCTGCTGCTGCTGGTACTTTTGGCGGGGGGTTGGTGTTGGGGGATAAGCGTGGGAAAGGAGGGTATTCCGGCGGCGGGGCGGCGGTGAAAGGTGTCGGGTTGACTACGGCGACGGTGCCTCGGTGTCAGGTGGAAGGGTGCCAGGTGGCGCTGGTGAACGCCAAAGACTACCACCGGAGGCACAAGGTGTGTGAGATGCACTCCAAGGCTCCCAAAGTTGTGGTCTTAGGGTTGGAGCAGAGGTTCTGTCAGCAGTGTAGCAGGTTTCACGTGGTGTCAGAGTTTGATGATTCAAAGAGAAGTTGCAGGAGGAGACTAGCAGGTCACAATGAGAGAAGAAGAAAGAGCTCCCACGATTCTGTTGCAAGAAATTCTTCACAAGGAGGGTGTGCTCTCTCTCTTCTGTCATCTAGAAGTGATTCTTGGCTTTCACCTTCTGATCTGTCAACAAGATGCAGTGCAGCATTGCGTGAATTGATAGCAGAAAACCGTGCAGCCATAATGGCGAGACAATTTGTATCAGACAGAGATTGGCATATTCAGCATAATGAAGTGGAAGACTTGAAGGAGATCCAACCGGAGTCCAATTACTTCCCACAACAACAGATGTTTCCACAGACACAGTGA 1023 0.5386 MDFPGNIFCLSNRDQNGNTNANTFAWDSWQTTTSNNNNTTSTFLNAFNAPVTALTAPEGSAANRPEPAGLASALMFLPQNAGVLRHRHQHQQHPYGGDGSHVHPDPHLMCLKLGKRHYFEDASGSGTVSSSSAAAAGTFGGGLVLGDKRGKGGYSGGGAAVKGVGLTTATVPRCQVEGCQVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQGGCALSLLSSRSDSWLSPSDLSTRCSAALRELIAENRAAIMARQFVSDRDWHIQHNEVEDLKEIQPESNYFPQQQMFPQTQ* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0533 340 Pfam SBP domain 174 247 IPR004333 GO:0003677
Vra4g0533 340 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 55 340 IPR044817 GO:0003677
Vra4g0533 340 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 55 340 - -
Vra4g0533 340 SUPERFAMILY SBT domain 172 253 IPR036893 GO:0003677|GO:0005634
Vra4g0533 340 Gene3D - 166 235 IPR036893 GO:0003677|GO:0005634
Vra4g0533 340 MobiDBLite consensus disorder prediction 238 259 - -
Vra4g0533 340 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0533 Vra-Chr4 10120730 10124695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0533 109 247 SBP-box Gene Family AT1G27370 51.799 1.62e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra4g0533 SBP 6.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0533 - - var:108327478 548.895