Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0524 ATGATGGCAGACCCAGAAATGAACACCTCAAATCTAAGCCACCACCACAACAACCCGTCATCATGGGTTCTCTTCGCCACACTTTTCCTCTCGTCTTTGTCCTTCTCACTCTCCGATCCAAGAATCACCGAAGCAGGGCTCTACTGTGGAACCGCCAAGGCCCCTCTGAAAGCCAACTACATCCCAAGTTTCACCAAGGAAATGGAGAGCCTCTCGCAGTTGGTCACCAACCAAAACTGGGGCACTCACTTTGTCAACACTTCAGGCTCCTCGATTCCCATTTATGGCTTTGCACAATGCTTCAAGGACCTGTCCAACACCGATTGTCTTCTCTGCTACGCAGCAAGCCGTACCAAGATTCCACGCTGTTTACCTTCTGTCTCTGCGCGCATCTACCTTGATGGCTGCTTCTTGCGTTATGACAACTACAGCTTCTATGCGGAGGTCAGTGACCCTTTGAGGGATACAGTGAACTGCACCTCACAGCATGGAACGGTTGTTGATAAAACTGAAAGGTTGAAACTTGAGGAGGGCGTTGGAAGGGTGGTTGAGACTGTCACCAACAGGGCTCTGGCAAAAGGTGGTGGCTTTGCTGTGGGAGAGGTTGAGGGGGTTTACGCATTGGCACAGTGCTGGAATACCATTGGGAGTGATGGGTGCAGAGAATGTTTGAGGAAAGCTGGGAAGGAGGTGAGAGGGTGCTTGCCAAAGAAGGATGGGAGGGCCTTGAATGCTGGCTGTTATTTGAGGTATTCGACAAACAAGTTCTACAATGAAGATGGCGATACCGATGGGAAAAATGGATTCTTAAGAAGAGGAGGAGTAATAGTAGCAGAAGTGTTAGCAGCAGCTGCAATTTTAGTGCTTAGTCTCTCTGCCTCCTATGTAGCCTTCACAAAATTAACTAGGATTAAAAAAGAAAACAATAATGTTGGTCAGATTTCCTCTTCCATAACAAAATCTAGCTTGAATTACAAGTACGAAACTCTTGAGAAGGCCACGGATTATTTTAACTCTTCAAGAAAAATAGGCCAAGGTGGAGCTGGCTCAGTTTTCAAAGGTATTCTCCCAAATGGGAAAGTTGTTGCAGTTAAAAGATTGATCTTCAATAACAGGCAATGGGTGGATGAGTTCTTCAACGAAGTGAACTTGATTAGCGGAATTGAACACAAGAACCTTGTCAAACTATTGGGATGTAGCATTGAGGGCCCTGAGAGCCTCCTTGTGTATGAGTACTTGCCTAAAAAGAGTTTAGACCAATTTATCTTTGAAAAAAACAGAACTCAGATTCTAAACTGGAAGCAGAGGTTTAATATCATTCTTGGAACGGCAGAGGGGCTTGCATATCTTCATCAAGGTACCAAAATAAGAATCATTCATCGAGATATCAAAAGCGGCAATGTTCTTCTGGACGAGAATCTCACTCCCAAGATTGCAGATTTCGGCCTTGCCCGGTGTTTTGGAGCAGATAAGTCACATTTGAGCACTGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTACCTAATTAGAGGACAACTAACAGATAAAGCTGATGTGTATAGTTTTGGAGTACTTGTTCTTGAGGTTGTAACTGGGAGGAGAAACAATGTCTTCCGAGAGGACTCTGGCTCGCTACTACAAACTGTTTGGAAACTTTACCGATCAAACACATTAACTGAAGCTGTTGATCCTTGCTTGGGAGATGATTATCCTGCAACTGAAGCATCAAGGGTGTTTCAAATTGGATTGCTTTGCACACAAGCTTCTGCCTCCCTAAGACCATCCATGTCTCAAGTTGTTTTCATGCTGATTAATTCAAATGAAGACGTTCCTACACCTAATCAGCCCCCATTTTTGAACACTGGAATGCTGGACTCAGATAGCTCCATTAAGTCTTATAGCACTAACAGCTTCATATCCAATGCCTTGAAGAAGATTGGAGCATCATCCTACAGCTACTCAGAGTCCTCTTGTTCACGCAACTCAGATGGGCCATCAAGAAGTGAAGAATCGATTGTTCAAGTTTGA 2034 0.4459 MMADPEMNTSNLSHHHNNPSSWVLFATLFLSSLSFSLSDPRITEAGLYCGTAKAPLKANYIPSFTKEMESLSQLVTNQNWGTHFVNTSGSSIPIYGFAQCFKDLSNTDCLLCYAASRTKIPRCLPSVSARIYLDGCFLRYDNYSFYAEVSDPLRDTVNCTSQHGTVVDKTERLKLEEGVGRVVETVTNRALAKGGGFAVGEVEGVYALAQCWNTIGSDGCRECLRKAGKEVRGCLPKKDGRALNAGCYLRYSTNKFYNEDGDTDGKNGFLRRGGVIVAEVLAAAAILVLSLSASYVAFTKLTRIKKENNNVGQISSSITKSSLNYKYETLEKATDYFNSSRKIGQGGAGSVFKGILPNGKVVAVKRLIFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPKKSLDQFIFEKNRTQILNWKQRFNIILGTAEGLAYLHQGTKIRIIHRDIKSGNVLLDENLTPKIADFGLARCFGADKSHLSTGIAGTLGYMAPEYLIRGQLTDKADVYSFGVLVLEVVTGRRNNVFREDSGSLLQTVWKLYRSNTLTEAVDPCLGDDYPATEASRVFQIGLLCTQASASLRPSMSQVVFMLINSNEDVPTPNQPPFLNTGMLDSDSSIKSYSTNSFISNALKKIGASSYSYSESSCSRNSDGPSRSEESIVQV* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0524 677 Gene3D Phosphorylase Kinase; domain 1 296 412 - -
Vra4g0524 677 ProSiteProfiles Gnk2-homologous domain profile. 42 145 IPR002902 -
Vra4g0524 677 SMART serkin_6 337 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0524 677 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 32 670 - -
Vra4g0524 677 SUPERFAMILY Protein kinase-like (PK-like) 320 635 IPR011009 -
Vra4g0524 677 MobiDBLite consensus disorder prediction 653 677 - -
Vra4g0524 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Vra4g0524 677 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 670 - -
Vra4g0524 677 ProSiteProfiles Protein kinase domain profile. 337 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0524 677 CDD STKc_IRAK 343 605 - -
Vra4g0524 677 Pfam Protein kinase domain 338 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0524 677 Pfam Salt stress response/antifungal 197 253 IPR002902 -
Vra4g0524 677 Pfam Salt stress response/antifungal 59 143 IPR002902 -
Vra4g0524 677 ProSiteProfiles Gnk2-homologous domain profile. 154 256 IPR002902 -
Vra4g0524 677 Gene3D Transferase(Phosphotransferase) domain 1 413 616 - -
Vra4g0524 677 Gene3D - 158 256 IPR038408 -
Vra4g0524 677 Gene3D - 45 145 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0524 Vra-Chr4 9852468 9856145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0524 23 502 Receptor kinase-like Gene Family AT5G40380 56.965 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra4g0524 Pkinase 9.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0524 - - gmx:100790404 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0524 4 9852468 9856145 Vra4g0524 4 9852468 9856145 ECH