Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0521 ATGTGGTTTTGTAGCGTCCTTGTCCAATTGGTCAAACGCTTCGGGATCAAAAAATGGTCGCACATCGCCAGGTTGCTCAATGGCAGGGTTGGAAAACAGTGCAGAGAGAGGTGGCACAATCATCTCCGGCCAAACATTAGGAAGGAGTCATGGAGCGTAGAGGAAGACAAAATCCTGATCGAAGCTCACAAGGAACTCGGGAACAAATGGGCAGAGATTGCAAGGAGAATGCCGGGAAGGACCGAAAACACCATCAAGAACCACTGGAACGCCACCAAGCGTCGCCAGAAGGCCAAGAGGCAGAGGAACAAGCGCAGGAGCTCCAAGGGGTCACCCACGCTACTCGAGAGCTACATAAGGAAAGTCACTGCGGCGGAAGAATCTGAGAAGGAGTTGAAGAACTCCATGAGCAAGATGAACCTGAATGACACCACCAAAACCGGTCTCTTTCGGGTTCGGTACGAGAGCTCCGAAGGTGACTTCAGCTCCGAGGAGGAGGAGCTTGGCTGGACCCTGCAGCACCACGTGGCATGTGGTGGTGATGGTGGTTATGTGCCAGTGATGGTGAACGCTGGGGAAGAGAACGCCATGGATTACGAGGTTGCCATGCAGATGGTACCAGAGGTCCAGATGAGGAAGGAGATGGATCTCATGGAGATGATCTATAGAAAAGGTTAA 678 0.5236 MWFCSVLVQLVKRFGIKKWSHIARLLNGRVGKQCRERWHNHLRPNIRKESWSVEEDKILIEAHKELGNKWAEIARRMPGRTENTIKNHWNATKRRQKAKRQRNKRRSSKGSPTLLESYIRKVTAAEESEKELKNSMSKMNLNDTTKTGLFRVRYESSEGDFSSEEEELGWTLQHHVACGGDGGYVPVMVNAGEENAMDYEVAMQMVPEVQMRKEMDLMEMIYRKG* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0521 225 Gene3D - 5 47 - -
Vra4g0521 225 MobiDBLite consensus disorder prediction 90 107 - -
Vra4g0521 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 97 IPR017930 -
Vra4g0521 225 ProSiteProfiles Myb-like domain profile. 43 93 IPR001005 -
Vra4g0521 225 MobiDBLite consensus disorder prediction 83 113 - -
Vra4g0521 225 SUPERFAMILY Homeodomain-like 22 99 IPR009057 -
Vra4g0521 225 ProSiteProfiles Myb-like domain profile. 7 42 IPR001005 -
Vra4g0521 225 CDD SANT 7 42 IPR001005 -
Vra4g0521 225 Coils Coil 115 135 - -
Vra4g0521 225 Pfam Myb-like DNA-binding domain 7 42 IPR001005 -
Vra4g0521 225 Pfam Myb-like DNA-binding domain 48 90 IPR001005 -
Vra4g0521 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 42 IPR017930 -
Vra4g0521 225 PANTHER MYB PROTEIN-RELATED 6 143 - -
Vra4g0521 225 Gene3D - 49 114 - -
Vra4g0521 225 PANTHER MYB DOMAIN PROTEIN 100-RELATED 6 143 - -
Vra4g0521 225 CDD SANT 50 93 IPR001005 -
Vra4g0521 225 SMART sant 4 44 IPR001005 -
Vra4g0521 225 SMART sant 47 95 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0521 Vra-Chr4 9774400 9778005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0521 6 122 MYB Transcription Factor Family AT4G18770 68.376 9.77e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra4g0521 Myb_DNA-binding 3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0521 K09422 - gmx:100793032 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0521 4 9774400 9778005 Vra4g0521 4 9774400 9778005 ECH
Vra4g0521 4 9774400 9778005 Vra1g0077 1 903334 906159 ECH