Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0517 ATGGATAAAAAACAGTGCAATACGTCTCAAGATCCTGAAGTGAGAAAAGGGCCATGGACAATGGAAGAAGATTTGATCTTGATCAACTATATTTCGAACCATGGGGAAGGTGTTTGGAACTCTTTGGCCAAAGCTGCTGGTCTTAAACGTACTGGAAAGAGTTGCCGACTTAGGTGGCTAAACTATCTCCGTCCTGATGTTAGAAGAGGGAATATTACACCCGAGGAACAACTTTTGATCATGGAGCTTCACGCAAAGTGGGGAAACAGGTGGTCAAAAATTGCCAAGCATCTACCAGGAAGGACTGATAATGAGATAAAAAACTACTGGAGGACCAGGATTCAGAAGCACATCAAGCAAGCCGAGAACTCTCAGCAACAGAGTAATTCTAATTCTGAGATAAATGACCATCAAGCTAGCACTAGCCAAGTGTCCACCATGGCTGAGCCCATGGAGACCTACTCTTCACCCTGTTACCAAGGAATGTTAGAGCCATTTTCTACTCAGATTCCCAATATTCCAGATCAATCCAGTTGTTGTACCAATGAAAACAACAATTATTGGAGCATGGAGGATATCTGGTCAATGCAGTTACTGAACGGGGATTAA 609 0.4302 MDKKQCNTSQDPEVRKGPWTMEEDLILINYISNHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAENSQQQSNSNSEINDHQASTSQVSTMAEPMETYSSPCYQGMLEPFSTQIPNIPDQSSCCTNENNNYWSMEDIWSMQLLNGD* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0517 202 Gene3D - 16 68 - -
Vra4g0517 202 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 199 - -
Vra4g0517 202 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Vra4g0517 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Vra4g0517 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vra4g0517 202 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 199 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vra4g0517 202 MobiDBLite consensus disorder prediction 118 143 - -
Vra4g0517 202 SMART sant 68 116 IPR001005 -
Vra4g0517 202 SMART sant 15 65 IPR001005 -
Vra4g0517 202 Gene3D - 73 144 - -
Vra4g0517 202 CDD SANT 73 112 IPR001005 -
Vra4g0517 202 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vra4g0517 202 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Vra4g0517 202 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vra4g0517 202 MobiDBLite consensus disorder prediction 119 143 - -
Vra4g0517 202 CDD SANT 18 63 IPR001005 -
Vra4g0517 202 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0517 Vra-Chr4 9692724 9696231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0517 4 202 MYB Transcription Factor Family AT3G01530 57.426 7.05e-78 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra4g0517 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0517 K09422 - gmx:778048 380.178