Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0509 ATGCTTGCAATGCAATTTGGCACGCGCCCTCACTACCCTCCTTCACTGTTCCTGAGCAGCTCCAACGCTTGTTCATCCTCTCGCATCCTCTACAGCAACAGAAACAAGCAGGTGTACCTTGTTCGCTCCAACGTTGGAACCCTCAACCTTAGAGTTTTCGCTGCGTCTGGCAACTCCTCATACAAGATGAACCTCAACGAGTACCTCGTTACTCTCGAGAAGCCCCTCGGCATTCGATTTGCGCTGACCGCCGATGGCAAAATCATCGTCCACTCTCTCACCAAAGGGGGTAATGCAGAGAGGTCCAGGATAATTATGGTTGGTGATACTTTGAAGAAAGCTGGCGATTCGTCTCAGAACACTCTCGTTGAGATTAAAGACGTTGGAAATACACAGAAGGTGCTAAATGAGCAAACAAGTTCTTTTAGTTTGGTTCTTGAGAGGCCCACATCTCCTTTTCCTATTCAAGTACTGCACAAGATGAATGATCTCGAGATAGTCTTTAATAGAGGGCGAGTTCCTATTGTCACATGGAACAAGACCCTATTGGCATCAAATTTACAATCATCTAGTGAGAGCAGTGCGAATTCTGGATTTTTGATGTTCAACTCAAAGTTTCTCAAACCAAATGCAAACAAGTTATTGGGCAACCAAAATCAACGTACCATCACCCATGGTGAGAGAAACTTCTTTGCTGAACACACACCACAAATTGCTTGTGTTTTTACTGAAGAAGTGTGTGGAGATGGAGATTGGGGTCATGGAAGTTTCCCACTCGAGGAGTATATTCAGGCTCTAGATCGTTCCAAGGATGAGATGTATTATAACCACTCTCTTGGTATGCGTTATAGTAAGATTACAGAGCAAATATATGTGGGATCCTGTATACAAACAGAAGATGATGTAGAGACGTTGTCAAAAGTTGAGGGAATTACTGCTGTTCTGAACTTCCAAAGTGGAACTGAAGCCGAAAATTGGGGAATCAATGCAAAATCAATCAATGAATCTTGTCAAAGGAATAATATTCTCATGATCAACTATCCTATTCGGGAGGGAGATTCTTATGATATGAGGAAAAAACTCCCATTTTGTGTGGGGCTCCTACTACGTTTGCTAAGGAAGAATCTTCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCGATCTCCTGCTTGTGTGATTGCCTACCTACATTGGATGACGGATGTTTCCCTTCATGCAGCATATACTTGGGTAACTGGGATGCACAATTGCAGACCTGACAGGCCGGCAATTGCATGGGCTACTTGGGATCTTATAGCCATGGTTGAAAATGCCAAACATGATGGACCCCCTACACATGCTGTCACATTTGTGTGGAATGGTCATGAGGGTGAGGATGTAACTTTGGTTGGAGACTTTACCGGAAATTGGAAAGAACCAGTAAAGGCAAAGTTCCAAGGTGGATCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTCATTGTAAATGGGCAATGGAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGACAGGGGAAACGTTAACAATATAATTGTGATTGGTGAAACTGCCAATGTTCGGCCTTCTATTCAGCACCAGCTGAAAGATGCTAACGTTGTCAAGGTGATTGAGAGGCCTTTGAATGAAAAGGAGCGGTTTATGCTGGCAAAAGCAGCTCGTTGTATTGCTTTTTCTATCAGTCCGATCACTTTGGCCCCCAAATAA 1749 0.4328 MLAMQFGTRPHYPPSLFLSSSNACSSSRILYSNRNKQVYLVRSNVGTLNLRVFAASGNSSYKMNLNEYLVTLEKPLGIRFALTADGKIIVHSLTKGGNAERSRIIMVGDTLKKAGDSSQNTLVEIKDVGNTQKVLNEQTSSFSLVLERPTSPFPIQVLHKMNDLEIVFNRGRVPIVTWNKTLLASNLQSSSESSANSGFLMFNSKFLKPNANKLLGNQNQRTITHGERNFFAEHTPQIACVFTEEVCGDGDWGHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSKVEGITAVLNFQSGTEAENWGINAKSINESCQRNNILMINYPIREGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHNCRPDRPAIAWATWDLIAMVENAKHDGPPTHAVTFVWNGHEGEDVTLVGDFTGNWKEPVKAKFQGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTASPAERDDRGNVNNIIVIGETANVRPSIQHQLKDANVVKVIERPLNEKERFMLAKAARCIAFSISPITLAPK* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0509 582 SUPERFAMILY E set domains 446 529 IPR014756 -
Vra4g0509 582 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 42 582 - -
Vra4g0509 582 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 272 420 IPR029021 -
Vra4g0509 582 Pfam Dual specificity phosphatase, catalytic domain 291 412 IPR000340 GO:0008138|GO:0016311
Vra4g0509 582 ProSiteProfiles Dual specificity protein phosphatase domain profile. 282 438 IPR020422 GO:0006470|GO:0008138
Vra4g0509 582 Gene3D Immunoglobulins 436 532 IPR013783 -
Vra4g0509 582 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 42 582 IPR030066 GO:0005983
Vra4g0509 582 SUPERFAMILY PDZ domain-like 72 165 IPR036034 GO:0005515
Vra4g0509 582 CDD E_set_AMPKbeta_like_N 449 528 - -
Vra4g0509 582 Gene3D Protein tyrosine phosphatase superfamily 275 546 IPR029021 -
Vra4g0509 582 CDD DSP_laforin-like 281 427 IPR045204 GO:0019203|GO:0046838
Vra4g0509 582 Pfam Glycogen recognition site of AMP-activated protein kinase 449 531 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0509 Vra-Chr4 9450001 9463805 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0509 134 582 Protein tyrosine phosphatase (PTP) family AT3G01510 68.820 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0509 - - gmx:100814503 1053.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0509 4 9450001 9463805 Vra4g0509 4 9450001 9463805 ECH