Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0508 ATGGATTGCAGAATAGAGAGTACAGAAACTCACAGGAACAAGTGTGCAGCATGCTTCAGACAGTTCAACAAACTGGAGCACCTTGTGGAGCACATGAGGATCTCGTATCATTCAGTTCATGAGCCAACCTGTGGCATTTGCAGGAAACACTGCAGGTCATTTGAGTCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAGCAGGAATGCAGAGATATATTTGCTTATAGAGGGTGCAAGTTTTGCTTGAAAGTGTTTGACAGCCCTAATTCTCGAAGGATTCACCAAGAAAAATGCCAACACTCTGGAACAAATGCTGGAATAATTGGTCGCTTTTCAAACTTAGGACTTCGTGATAATTTGGCCATTAGTGGTGGAGCAAGAGGACCACAAGTAGTTGCATTAGCATGTAAAATGGTTGGAGGTGGCAGTGATGGCTCATTGGATCTCTGTGGAAGAGTGTGCTTAACCGATGAGCATGAGAACATCATATTCCATTCTTATGTGAAGCCACCAATTCCTGTCACAAACTACAGGTATGAGACAACAGGCATTAGACCAGAATACCTGAGGGATGCAATGCCAATGAGACAAGTTCAAAGGAGGATTCAAGACTTTCTTTGCAACGGTGAACCTATGTGGACGATTCGGGCAAGAGGAGGAAGAGCAAGGATTCTTGTGGGCCATGGTTTGGATCATGACCTTGAATGTCTGCAAATAGAATATCGAACAGAAAAGATAAGGGACACTGCAAAATACCCTCCTCTGATGAAAACGAGCAAGCTCAGCAACTCACTCAAGTACTTAACGCAAACATATCTTGGGTATGACATTCAAGTTGGAATTCAAGATCCTTATGATGACTGTGTGGCAACTATGAGGCTGTACATGAGAATGAGATCCCAAGTACACAGAACACAGGATTACCCTTTGGTGTCTGACCCCCAGAACAGGAACAATTTTGCTTCGTGGAGGCAAAGTGATCTTGAAAGAATGACTCCTGAACAAATGCTGGAAATATCAAGATCTGACTACTATTGCTGGTGCTTGGATTCCTTCTATCCCTGA 1068 0.4335 MDCRIESTETHRNKCAACFRQFNKLEHLVEHMRISYHSVHEPTCGICRKHCRSFESLREHLIGPLPKQECRDIFAYRGCKFCLKVFDSPNSRRIHQEKCQHSGTNAGIIGRFSNLGLRDNLAISGGARGPQVVALACKMVGGGSDGSLDLCGRVCLTDEHENIIFHSYVKPPIPVTNYRYETTGIRPEYLRDAMPMRQVQRRIQDFLCNGEPMWTIRARGGRARILVGHGLDHDLECLQIEYRTEKIRDTAKYPPLMKTSKLSNSLKYLTQTYLGYDIQVGIQDPYDDCVATMRLYMRMRSQVHRTQDYPLVSDPQNRNNFASWRQSDLERMTPEQMLEISRSDYYCWCLDSFYP* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0508 355 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Vra4g0508 355 Gene3D - 129 314 IPR036397 GO:0003676
Vra4g0508 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Vra4g0508 355 SMART exoiiiendus 131 305 IPR013520 -
Vra4g0508 355 SUPERFAMILY Ribonuclease H-like 149 301 IPR012337 -
Vra4g0508 355 Pfam Exonuclease 155 295 IPR013520 -
Vra4g0508 355 PANTHER OS02G0709000 PROTEIN 6 352 - -
Vra4g0508 355 CDD REX4_like 133 296 IPR037431 GO:0006364|GO:0008408
Vra4g0508 355 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Vra4g0508 355 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 6 352 - -
Vra4g0508 355 SMART c2h2final6 42 62 IPR013087 -
Vra4g0508 355 SMART c2h2final6 13 37 IPR013087 -
Vra4g0508 355 SMART c2h2final6 77 101 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0508 Vra-Chr4 9419770 9421862 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0508 1 353 C2H2 Transcription Factor Family AT3G27970 73.596 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0508 - - gmx:100813973 697.967