Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0502 ATGAATGGTAAGTGGTCCTTTGACCATACCCATTTGAAGATGGCTTGGATTCAGCATCAAATCCAACAAAAAGATGGTTACTTGATCTATCCACCACCGGTTTTGCCTCCCCCTTCACCACCAAGTTGGGGTGCATTCCACAAAGAATCAATGTCTTCGTCGTCATCATCATCATCATCTCCCTCACCTTCATCCTCTGGTGCTAGAATTAGTCCTGCTGTGCTTTTCATCATTGTGATTCTGGCTGTTCTATTTTTCATCTCTGGCCTGCTCCACCTGCTTGTTAGATTTCTCATGAAGAACCCTTCTTCCTCAGCATCTTCTCAGTCCAATAGGAACCAGGAAAATGCAACCTCTGATACTCTTCAAAGGCAGCTGCAACAGCTGTTCCATCTTCATGATTCTGGTCTGGACCAGGCTTTTATTGATGGACTTCCTGTTTTCCAATACAAGGAGATAAAGGGGTTGAAGGAGCCATTTGACTGTGCTGTCTGTCTCTGTGAGTTTTCTGAAAAGGATAAACTTAGGTTGCTGCCTATGTGTAGCCATGCCTTTCATATCAGCTGTATAGACACCTGGCTTTTGTCCAACTCCTCATGCCCTCTTTGCAGGGGTACCCTCCTTACTCCTGGCTTTCCCCTTGAAAATCCATTGTTTGATTTTGATGATTTGAGGGATGATAATGGGGAACCTGAGTTCACAACTAGGCAGAAAACGATTGAAATTGAAGAAACTGTGGTAGAGAAGGGGGTTTTCCCTGTGAGACTTGGCAAATTCAGAAGGCTTGATATGGAGGCAGAGGTAGCTGCTGGAGGAGAGACTAGTAGCAATAATTTGGATGCCAGAAGGTGTTATTCCATGGGATCTTATCAGTACGTGCTTGGGAATTCAGACCTCAGAATAACCTTGAGCCATGACCGAGAAGGTCGTCAAGCACAGTTCTTGAAAGGAACAGAAAATTTAGAGAGACTTTCAGTTGAGGGGGATATTGAAGGAAAGAAGATTACAAGTGTGTGTAAAGGTGAGAGCTTTTCTGTTTCCAAAATCTGGCAGTGGTCACAGAAGGGAAAATTTTCAGTTTCTTCTGATACCCAGATGAGTATGCCCTCTTCTCTTATCACGGATTTGCCTTGGATGAGAGAAACAAGAAGGATATGA 1158 0.4387 MNGKWSFDHTHLKMAWIQHQIQQKDGYLIYPPPVLPPPSPPSWGAFHKESMSSSSSSSSSPSPSSSGARISPAVLFIIVILAVLFFISGLLHLLVRFLMKNPSSSASSQSNRNQENATSDTLQRQLQQLFHLHDSGLDQAFIDGLPVFQYKEIKGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSSCPLCRGTLLTPGFPLENPLFDFDDLRDDNGEPEFTTRQKTIEIEETVVEKGVFPVRLGKFRRLDMEAEVAAGGETSSNNLDARRCYSMGSYQYVLGNSDLRITLSHDREGRQAQFLKGTENLERLSVEGDIEGKKITSVCKGESFSVSKIWQWSQKGKFSVSSDTQMSMPSSLITDLPWMRETRRI* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0502 385 SUPERFAMILY RING/U-box 141 210 - -
Vra4g0502 385 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Vra4g0502 385 MobiDBLite consensus disorder prediction 41 65 - -
Vra4g0502 385 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 14 368 - -
Vra4g0502 385 Pfam Ring finger domain 161 204 IPR001841 -
Vra4g0502 385 SMART ring_2 162 203 IPR001841 -
Vra4g0502 385 CDD RING-H2_PA-TM-RING 161 204 - -
Vra4g0502 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 14 368 - -
Vra4g0502 385 MobiDBLite consensus disorder prediction 46 65 - -
Vra4g0502 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 209 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0502 Vra-Chr4 9250040 9252378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0502 59 357 C3H Transcription Factor Family AT2G18650 40.719 2.03e-58 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0502 - - qsu:112013252 511.916