Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0501 ATGACCAGTTGTGTAGAGTACGAGGTCAAGAGAACACTGATACAATTTCTGGCACAAGTCTCTGGAAAAGATGGCCAACAGAACTCCACTTTGGTATGGAAACAAGACTCTGATCCCTGCAAGGGCCCCTGGCAAGGTGTACTCTGTGATCGTCAAAACATGTCCATAAAGAAGTTGCTACTTGATAACCTCAATTTCTCTGGAACACTTGATCTTGCTATGCTTTGCAACTTGCAGCCCCTGGCTGCATCTCTCACATATCTTAGCCTTGATGGCAACAAAATCAGTGGAGGGATGGCGTCTGAGGTTGGAAATTGCAAACAGCTCACTCGCCTGCACCTAAGTGGAAACCAACTTGCTGGAGACCTTCCTAGTTCACTTGCTATGCTGAACAATTTGAAGAGATTGGACATTTCAAATAACCAGTTTTCAGGATCTTTACCAGACTTGTATAGAATCTCAGGGCTGAAAATGTTCCTCGCACAGAACAATTACCTTGGAGGCACTATACCTGCTTTTGAGTTCTCTAATTTTGACCAATTCAATGTCTCCTTCAACAATTTCCGTGGCCGTATTCCAAACGTGCATGGCTATTTCTCTGCTGACAGCTTTCTTGGTAATCCTGAACTATGTGGAGATCCACTGCCAAAGAATTGCTCTGATAAGCCTATGCCTTTTAGTGAGGCTCAGACATCAGAAAAACCAAAGGGTACTTCCAAGGAGCAGATTCTTATGTACTCAGGGTATGCTTCATTGGGTGTCATCATTGTCCTTTTCGTAGTCTTAAAGCTGTGTAGAAGAAAGAAGGGAGAGAATAATAAAGTTGAAGCATTGAATAATAGGGTAGCGGCCAGTGGTGTTGAAAAGGCGAGAAATGTTTCAAGTGAATACAAAAATGAGGTAAGCAGATCTGAATTTTCAGTCGTCCCTTCTGAAAGTGGGATGGTTTCACAATCACTGGTGGTTCTTTCGAGCCAAGCGGCAATGGAACTGAGATTGGAGGAGTTGTTGGGAGCACCTGCAGAACTTATTGGAAGAGGAAAACATGGAAGTCTTTATAAGGTGATGCTTGACAATGGGATGATGGTAGTTGTGAAAAGGATCAAGGATTGGACTATTTCAAGCCACGATTTCAAACAAAGAATGCAAATACTGAGCCAAGCAAAGCACCCTCATCTCCTTCCACCACTTGCTTTCTATTCTTCTAAACAAGAAAAGCTTTTGGTGTATGAATATCAGCAGAATGGCAGTTTATTCAAGCTCCTACATGGAACTACAAAAGCCTTAGACTGGACCAGCAGACTTGGGATTGCAGCAACAATTGCTGAGGCATTAGCTTTCCTGCACCAAGAGGTAGGCCATCATGGTATTGTTCATGGAAATCTGAAATCCTCCAACATTTTGCTAAACAAGAATATGGAGCCATGCATAAGTGAATGTGGCATTATGGATATGGATGATCAAAGAGGTTCAGCTGATGGTGGTGCATTAGATATCTTAAAAGGAGATGTTTATGGGTTTGGTGTGATTCTTCTTGAACTGCTTACTGGTAAGTTAGTGAAGGGAAATGGGATTGACTTGACTGATTGGGTTCAGTCAGTTGTGAGGGAAGAATGGACAGGTGAAGTCTTTGATAAGTCTCTGATATCAGAGTATGCAAGCGAAGAGAGAATGGTGAATTTGCTTCAAGTGGCTATAAGATGTGTGAATCCTTCACCACAGGTAAGGCCAACCATGAACCAAGTTGCTCTCATCATTAACACTATCAAAGAAGAAGACGATAAATCATTGATCTATGAAGTCTGA 1806 0.4225 MTSCVEYEVKRTLIQFLAQVSGKDGQQNSTLVWKQDSDPCKGPWQGVLCDRQNMSIKKLLLDNLNFSGTLDLAMLCNLQPLAASLTYLSLDGNKISGGMASEVGNCKQLTRLHLSGNQLAGDLPSSLAMLNNLKRLDISNNQFSGSLPDLYRISGLKMFLAQNNYLGGTIPAFEFSNFDQFNVSFNNFRGRIPNVHGYFSADSFLGNPELCGDPLPKNCSDKPMPFSEAQTSEKPKGTSKEQILMYSGYASLGVIIVLFVVLKLCRRKKGENNKVEALNNRVAASGVEKARNVSSEYKNEVSRSEFSVVPSESGMVSQSLVVLSSQAAMELRLEELLGAPAELIGRGKHGSLYKVMLDNGMMVVVKRIKDWTISSHDFKQRMQILSQAKHPHLLPPLAFYSSKQEKLLVYEYQQNGSLFKLLHGTTKALDWTSRLGIAATIAEALAFLHQEVGHHGIVHGNLKSSNILLNKNMEPCISECGIMDMDDQRGSADGGALDILKGDVYGFGVILLELLTGKLVKGNGIDLTDWVQSVVREEWTGEVFDKSLISEYASEERMVNLLQVAIRCVNPSPQVRPTMNQVALIINTIKEEDDKSLIYEV* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0501 601 Pfam Leucine Rich repeats (2 copies) 107 150 IPR025875 -
Vra4g0501 601 ProSiteProfiles Protein kinase domain profile. 338 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0501 601 PANTHER OS10G0387400 PROTEIN 3 600 - -
Vra4g0501 601 Gene3D Transferase(Phosphotransferase) domain 1 414 600 - -
Vra4g0501 601 SUPERFAMILY L domain-like 31 197 - -
Vra4g0501 601 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Vra4g0501 601 SUPERFAMILY Protein kinase-like (PK-like) 342 583 IPR011009 -
Vra4g0501 601 Gene3D Ribonuclease Inhibitor 8 177 IPR032675 -
Vra4g0501 601 Gene3D Phosphorylase Kinase; domain 1 311 412 - -
Vra4g0501 601 PANTHER OS05G0588300 PROTEIN 3 600 - -
Vra4g0501 601 Pfam Protein tyrosine and serine/threonine kinase 342 583 IPR001245 GO:0004672|GO:0006468
Vra4g0501 601 Gene3D Ribonuclease Inhibitor 178 222 IPR032675 -
Vra4g0501 601 Pfam Leucine rich repeat N-terminal domain 11 50 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0501 Vra-Chr4 9238129 9240034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0501 12 590 Receptor kinase-like Gene Family AT1G68400 34.499 4.27e-90 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra4g0501 PK_Tyr_Ser-Thr 3.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0501 - - gmx:100813796 951.429