Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0500 ATGGGAGTCCATGGTCTCTGGGAACTACTCTCCCCCGTCGGTCGCCGCGTCTCCGTGGAAACCCTCGCCGGGAAAACCCTCGCCGTTGATGCGAGCATATGGATGGTGCAGTTTATGAAAGCGATGCGCGACGAGAAGGGGGAAATGGTTCGCAACGCCCATTTGCTGGGATTTTTCCGACGCATTTGCAAGCTTCTATTCCTCCGCACTAAGCCGGTCTTCGTCTTCGACGGCGGGACCCCCGCCCTCAAGCGCCGCACCGTCATTGCCCGCCGCCGGCAGCGCGAAAACGCTCAAGCTAAAGTCCGCAAAACTGCGGAGAAATTGCTGCTCAATCATTTAAAGACAATAAGATTGAAGGAACTGGCTGATGATATTAAGAGCCAGAGGATGCAGAAGAATAGTAATACTAAGGGTCAGAATGGATCTAATCAAAAGGACTTTGTTGGTAGTGATTCAAGAGGAAGTCACGTGAAAGAGCTAGATGAAATGTCTGCAGCTAAATTTGCAACTAAGGAGGACATAAATTCTTCACAGGCAACATTATCCTCAAGTTACAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAATGGAAAACATGCTAGAAAAGGAGTGCCGTCTATTATAATTAATCCTTCAGAGGAAGAACACCGCACAGAAGAACAGATTCTACTGCCATCAGTAAATGCAGAAGTTGATGTAGCTGTATTAGCTGCTTTGCCACAGTCTATGCAACTCGATATTCTTGCACAGCTAAAAGGAAAGAAAAAAGAAGGGTTACTAAAGGAAGTTTACAATCACGAACAACATGATGTCGATTATCAGGGCAAGGGCAAAGGGATTCTTCTCCGTGAAGCTGGCATGGTTGGTTGTAGCTCCAGACATGACACTGTTGCACCAAGGACTGACAATCAAGACTCAATTGACGAAATGTTGGCTGCATCTATTGCTCTGGAGGAAAATGAAAAGTTAGTAAATAATGCATCAACTTCTGTTGGGGCTTCCACTATTGAGGAAGATGAAGTTGACTATGACGAAGATGAAGAGATGATACTGCCAGCTATGCATGGTGAAGTTGATCCACTTGTTCTAGCCTCATTACCTCCATCAATGCAGCTGGACCTTCTTGTTCAGATGAGAGAGCGTTTAATTGCAGAGAACAGACAAAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGGGAGATAAATGAAGTGCAGAAAGCTGCAGCTGGAGGAGGAGTAGAGGGTGTACAGACTTCACGGATTGCATCTGAAGCCAACAGAGAATATATATTTTCATCATCTTTTACTGGTGATAAACATGAACTTACCTCCACCGGCTTAGAGAAAAATAAAAGTACAAAACAGAAGGCAAAAGGAACACATTATTCTCAGAATCTTGCAAATAGCATTTTGGCTGGAAATGATTTTAATAAATCAAGTGAATTGGTTTGCAATGAACCTGGTGAGCCTGCTGATGAAAATATTCAGACATATATTGATGACAGAGGTCAATTTCGTGTAAGTAGATTGAGAGCAATGGGGATGCGTATGACCCGTGATATACAAAGAAATTTGGATTTGATGAAGGAGTTCGAGCAGGAAAGTGCACAGGTGAACAAGGCTTCAAATATTGGAACAATTAAAAATGGAGAAAATAAGGGTTCATCAGAAAGTTCTGGGATCCAGCCTGTTGGTAAATCACAAGAGGTGAATGTTGACTTAGTTGGAGAGAATGTGCAAAATGAACAAATTATGCTAGACCAGAATGCTTCTATCGATATATCTTTTGAATACGGTTGCAAAAATGAGTTTGCAAATGGTGAGGATGATATATTTTCTAGTTTAGTAGGAGGAAATCCACTGGCGATATTTGGCACTGATGATTCTGCAGCAACAGTTCAACCTTCTCATTCTGATTGGGAAGAAGGAATAGTTGAAGGTAAGAGGACTGTTTTTCCCAAACATGATAAGGTGGAATTGAAGTCTTCTGTTGCAGATGACGATAATAATAATGAAAGTGAAGTGGAATGGGAGGAAGGAGATTGTGATCGTGCTAACAGCAGCTTACTGTCAGGAAAATATGCATCCCGAGGGCAATTGGAGGAGGAGTCCAATTTGCAAGAGGCAATAAGGAGAAGTCTTGAAAGTGCAGGGAATGGAAAACACAAATGTATGTCATTGCTTGATGCGCATTCAAATACTTATGAGAACAAATTGGATCACGATTTTGAACATGGTGATCATTCTGACCCAATGGCTTTAAATGAGAAAAGTGGGTTCCTGAATAATAAAAATAAAATGGAGGGAATCACTTTGTGTAGGGAAGATGGTACTGAAAAAAAGGAATTACTTGAAACTGAAGATAGAGATAAAACGCATGATTTTGTTTCCGTTAATAATGCACAAACTTTCCATTTTGATGGAAGTCCTTCAAAGCCAGCTTTGACTTTTATTTCAGATAAAAATGAGACATTGATTGACACAACTTGCAGATGGGACAGTCAACCTTGTTCTGAAGATTCAATTTCAGATACAAATATAATGATGAAGGACCAGGTCCCTGTGGTTGAAAAGAAGTTATCTGATGAACATGATAATGATAAAGTGTCTTCCTATCATAAGAGTACACCCAAGGCTGTTCCAGTTGGCCCAACTGAAGAGGAGAAAAAGAACTATATTAAGGAACCTGAACCATTTAGTAATTGTACTGACACTACCAAACCCACCATTCATTTGGGGGAGTCATCCTTGAAAGGAGTAACAGAAGAGCTTATTGAGCCAAACTTGGCTTCAGAGGGTAATAATGGAAACTTTTTTGACAAAAGGAACAGTAGCCATGGCAGTGATACGGTTAACAGCCCAGGGGATTTTCCTGCTCTAGCAACTCAGGTTAGCCTGGAGGAAGAAATTCAAATTCTTGGTCAAGAATATATTAACCTCGAGAATGAGCAGAGGAAGCTAGAGCGGAATGCAGAGTCGGTAAACAGTGAATTATTCACTGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCAGAAGCTCAATGTGCTTATTTGGAACTTGAGAATCTAGTTGATGGTGTTGTAACTGATGACTCTGATGTCCTTCTATTTGGGGCACGCAGTGTTTACAAAAATATATTTGATGACCGAAAATATGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGACTGACCAGAGAAAAATTAATACGCATGGCTCTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATCGTTAATGCTATTGAGGTTTTGAATGCATTCCCTGAGGAAGATGGCCTCCAGAAATTCCGGAAATGGGTTGAGTCACCAGATCCCACCATCCTTGGAAGGTTGGATGCAAAAAGTGGATCAAATTCCAGAAAGAAAGGATCAAAAGTTGAAGAAAAGATAAATTCCTTAAATTGTGATGCTAAAGAGTCTCCATCAGAGCAGAACCTCCCCCATGCCCTGGAGCAAAATAAGTTGCCAGATTACATTCAAGAATCAAAGCAAACTTTCTTCAATAAGCATAGAAATGTTAGCAAGAATTGGCACATCCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTATTGTTCTCCACATGTTGATAAATCAACCGAGCCTTTCACATGGGGGAAGCCAGATCACCTTGTTCTTCGGAAATTGTGCTGGGAGAAATTTGGCTGGATTGGCCAGAAAGCAGACGAATTGCTATTACCTGTGTTAAAGGAGTATAATAAACGTGAGACTCAATTGCGGTTGGAAGCATTTTACAGTTTTAATGAGAGATTTGCGAAAATCCGTAGCAAAAGAATTAAGAAGGCAGTAAAAGGAATAACTGGTAAGCTGCCTTCAGATATGATAGATGATTCTGCAGAGGTGTTGTCCAAGAGTAGGAAGATTGGGAGAGAACCCGAGGATAGCACATTAGAGATTTCAGGGGGAACAGATAAACGTCTTGAACGTCAAAGGAAATCAAAAATAAAACAGTCAACGAAAAGGAAGAATGATACTGTTGCCAAGGAACAGTCAAAGAAAAAGAAAGACAATAATGATCCGTCTTCAGCACCTGGTACATCAGAGATGGAGAATTTACAGCCAAGTATGCAGACAGAAGAACGGTGTGATGGTAAGGCATTAATTCAGAATACAAGTGGCCGAGGAAGACATAGAGGTATGGGAATAAAAAGAGGAAGGGACAAGGAGAATCTCAGTTCATCTGCTAGCAGTGACATTGATGATCAGGGACCAAGAGTGCATGTGGATAAGTTTCGAGAACACGTGAGAAAGTCATTGCGATCTCGGAAACCTGTCAACTATTCTTTCGAAGATCCTGAAGATGAAGATGCGGATGATGCCTTTGATCATAGTAATCAGACTGGTCCAATTGAAGAAAATTTATCTCATATTCATGGTGCATCTGAAGATGGTCCAACAGATTGCAGTGCAATGAATTTTCCTTCAAGGGAGAACTCACCAACCGGCCCTTTCAAGTCAGAAGGTCCGTTTTGCGTGCATGCAGGTGATATTAATCATCCTAGTACTGGCAATCATGATTCTTCTACTGGAAATCATGACTCTTCTGATGACTACCTTAAAATGGGAGGTGGATTCTGTTTAGATGATGGTGACACAGTGGATTCTACTCAAGACTTTTCACACTTTTCTGATTGTTTGGATGAAACTAACCGTGATAAAAATAGTTCAGATATATTATTTTCTGGCACTGAAAAGCCTGAAAATGGGACAGAAGGTGGAGGAGAATTTAATGAATTTGGTATAAAGCGAAATGACCTTGTAAATACTAGTAGTTATGATCATTCTGACGTAGGGATCTTGAAACCAGAGAATGTTCATAACAATAGTGGAGCCTCTGCTGGAGTTTTCAGTGCTATGCCTTTTTTGAGGAAAAGAAGGAAGAAGTAA 5058 0.4089 MGVHGLWELLSPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKTIRLKELADDIKSQRMQKNSNTKGQNGSNQKDFVGSDSRGSHVKELDEMSAAKFATKEDINSSQATLSSSYNQEELDEMLAASIAAEENGKHARKGVPSIIINPSEEEHRTEEQILLPSVNAEVDVAVLAALPQSMQLDILAQLKGKKKEGLLKEVYNHEQHDVDYQGKGKGILLREAGMVGCSSRHDTVAPRTDNQDSIDEMLAASIALEENEKLVNNASTSVGASTIEEDEVDYDEDEEMILPAMHGEVDPLVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKAAAGGGVEGVQTSRIASEANREYIFSSSFTGDKHELTSTGLEKNKSTKQKAKGTHYSQNLANSILAGNDFNKSSELVCNEPGEPADENIQTYIDDRGQFRVSRLRAMGMRMTRDIQRNLDLMKEFEQESAQVNKASNIGTIKNGENKGSSESSGIQPVGKSQEVNVDLVGENVQNEQIMLDQNASIDISFEYGCKNEFANGEDDIFSSLVGGNPLAIFGTDDSAATVQPSHSDWEEGIVEGKRTVFPKHDKVELKSSVADDDNNNESEVEWEEGDCDRANSSLLSGKYASRGQLEEESNLQEAIRRSLESAGNGKHKCMSLLDAHSNTYENKLDHDFEHGDHSDPMALNEKSGFLNNKNKMEGITLCREDGTEKKELLETEDRDKTHDFVSVNNAQTFHFDGSPSKPALTFISDKNETLIDTTCRWDSQPCSEDSISDTNIMMKDQVPVVEKKLSDEHDNDKVSSYHKSTPKAVPVGPTEEEKKNYIKEPEPFSNCTDTTKPTIHLGESSLKGVTEELIEPNLASEGNNGNFFDKRNSSHGSDTVNSPGDFPALATQVSLEEEIQILGQEYINLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELENLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEDGLQKFRKWVESPDPTILGRLDAKSGSNSRKKGSKVEEKINSLNCDAKESPSEQNLPHALEQNKLPDYIQESKQTFFNKHRNVSKNWHIPSSFPSETVISAYCSPHVDKSTEPFTWGKPDHLVLRKLCWEKFGWIGQKADELLLPVLKEYNKRETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKLPSDMIDDSAEVLSKSRKIGREPEDSTLEISGGTDKRLERQRKSKIKQSTKRKNDTVAKEQSKKKKDNNDPSSAPGTSEMENLQPSMQTEERCDGKALIQNTSGRGRHRGMGIKRGRDKENLSSSASSDIDDQGPRVHVDKFREHVRKSLRSRKPVNYSFEDPEDEDADDAFDHSNQTGPIEENLSHIHGASEDGPTDCSAMNFPSRENSPTGPFKSEGPFCVHAGDINHPSTGNHDSSTGNHDSSDDYLKMGGGFCLDDGDTVDSTQDFSHFSDCLDETNRDKNSSDILFSGTEKPENGTEGGGEFNEFGIKRNDLVNTSSYDHSDVGILKPENVHNNSGASAGVFSAMPFLRKRRKK* 1686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0500 1685 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1101 1310 IPR036279 -
Vra4g0500 1685 Coils Coil 988 1022 - -
Vra4g0500 1685 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Vra4g0500 1685 SMART xpgn3 1 98 IPR006085 GO:0004518
Vra4g0500 1685 MobiDBLite consensus disorder prediction 129 151 - -
Vra4g0500 1685 Gene3D - 986 1100 - -
Vra4g0500 1685 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 264 - -
Vra4g0500 1685 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 268 1405 - -
Vra4g0500 1685 MobiDBLite consensus disorder prediction 128 157 - -
Vra4g0500 1685 MobiDBLite consensus disorder prediction 1340 1572 - -
Vra4g0500 1685 CDD H3TH_XPG 1104 1248 - -
Vra4g0500 1685 Gene3D - 1 144 - -
Vra4g0500 1685 MobiDBLite consensus disorder prediction 1397 1415 - -
Vra4g0500 1685 MobiDBLite consensus disorder prediction 1610 1634 - -
Vra4g0500 1685 ProSitePatterns XPG protein signature 2. 1035 1049 IPR019974 GO:0016788
Vra4g0500 1685 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vra4g0500 1685 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Vra4g0500 1685 Gene3D - 1101 1156 - -
Vra4g0500 1685 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Vra4g0500 1685 MobiDBLite consensus disorder prediction 886 913 - -
Vra4g0500 1685 SUPERFAMILY PIN domain-like 2 1116 IPR029060 -
Vra4g0500 1685 MobiDBLite consensus disorder prediction 570 590 - -
Vra4g0500 1685 SMART xpgineu 1032 1101 IPR006086 GO:0004518
Vra4g0500 1685 MobiDBLite consensus disorder prediction 1340 1368 - -
Vra4g0500 1685 SMART HhH_4 1103 1136 IPR008918 GO:0003677|GO:0003824
Vra4g0500 1685 Pfam XPG I-region 1035 1116 IPR006086 GO:0004518
Vra4g0500 1685 MobiDBLite consensus disorder prediction 1376 1396 - -
Vra4g0500 1685 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 268 1405 - -
Vra4g0500 1685 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 1 264 - -
Vra4g0500 1685 MobiDBLite consensus disorder prediction 954 979 - -
Vra4g0500 1685 CDD PIN_XPG_RAD2 1018 1102 - -
Vra4g0500 1685 CDD PIN_XPG_RAD2 2 92 - -
Vra4g0500 1685 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vra4g0500 1685 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vra4g0500 1685 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0500 Vra-Chr4 9214995 9227535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0500 1026 1153 Core DNA Replication Machinery Family AT5G26680 32.432 4.33e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0500 K10846 - gmx:100820295 2524.58