Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0492 ATGGAGTGTGAAGTGAAGTTACAAGAGGGAGATCTGCATGCAGAGGTGGTAACTGAACCAAACCCTGTTGGTTTTGACAACATGGAAGAAGAACAAACTTTGTCGGTTGCCGAGAGAGAGATGTGGCTGAATGGTGACCAAGACGAGATTCTGGGAGTCAATGAGGCTTCTATGTTCTACGACGATTTCCCTACTCTCCCTGATTTCCCTTGCATGTCGTCATCGTCTTCTTCATCTTCCGCGCCACCGCTTCCTCTGAAGACCATGACGTGTTCCACCACAACCACAGCAACCACCACCACTTCCTCTTCTTCCTCATCCTCTTCATGGGCCGTGTTGAGGTCAGATGTTGAGGAAGATGTGGAGAAAAATCATGGCAACGGCTACATGCATGACCAGTTTGATGCAACAGCTTTGTCTTCCACCGCTTCCATGGAGATTTCCCAACAGCAAAACCCTGATCCTGGGCTTGGTGGCTCTGTTGGAGAGTGCATGGAGGATGTTATGGACACTTTTGGGTACATGGAGCTTTTAGAGGCCAACGACTTCTTCGATCCTGCCTCAATCTTTGAGAACGAGGAGAGCGAAAACCCTTTAATAGAATTTGGCTCACTGGAGGAACAGGTGTCACTGCAAGAGGGTCAACAGGAAATGATGCATCAGCGAGAGAACATTGAAGACGATCGCAAGGTTCCTGTGTGTGAAGAGATAAAAGGAGAGGAAGACGGTGGTGACGGTGGTGGTGGCGTGGTAGATGATGAAATGAGTAATGTCTTTTTGGAGTGGCTCAAGTCTAACAAGGACAGTGTTTCTGCTAATGACTTGAGGAATGTGAAGCTCAAGAAGGCAACAATTGAAAGCGCAGCAAAGCGTTTAGGGGGAGGAAAAGAAGCTATGAAACAGTTGCTGAAGCTGATTCTTGAGTGGGTTCAAACCAGCCACCTTCAGAATAAGCGGCGCAAGGACAATAGTGACAATGTTAACGACCCTCTTCAGGCACAGATTCAGGATCCCAGTGCCCAAAACAACCAGAACACTCACACCAGTGGCTCATTTGCACCTGAATCGAACTCTTGTTTCAACAACCAGACACCCTGGTTGAGTCCTCAAACTTTTGGGACAGATCAGACCCCTATCATGGTTCCATCACAGCCCTATTCACAACCCATGGTGGGGTATGTGGGTGACCCTTACACCAGTGGTTCTCCTTCGAATAACATCACAGCCACTCATAACCATAACAATAATAACCCTTACCAACCAGGCACGGACCAATACCACATGTTGGAATCAGCACATTCATGGCCTCATTCTCAGTTCAATGTTCCTTCTCCTTATAACCAGTCTTATGGGGACAACGGTCTTTTCACACCTGGGGGTTTTGGCGGCTATGGCAATAACCAGTACCCTTATCAGTTTTTTCATGGTCCTGGTGATAAGTTGATGAGGTTAGGACCCTCTGCAACTAAGGAAGCAAGGAAGAAGAGAATGGCGAGGCAGAGAAGGTTTTTATCTCATCACAGGAATCACAATGGTAATCACCACCAGAATCAAGGGTCTGACCCACATACAAGACTGGGAAGTGATAATTGCACCACTGGTTTGGTTGCACCTCATCAAGCAAATTCTGCAGCAGCCAATTGGATGTACTGGCAGGCCATGGCGGGTGGCTCGGCTGGTCCTTTGGCGCAGGTGGTTCCGACCGATCCACTGGCCGGACAAACGGTGGTGGACCGGTCCACCATGCACACACAGAATTCTCATCAGAATAGAGCTGCATCAGATAGGAGACAGGGTTGGAAGCCTGAGAAGAACTTGAGATTCCTTCTGCAAAAGGTGTTGAAGCAAAGCGATGTGGGAAGTTTGGGAAGAATAGTTTTGCCAAAAAAAGAAGCAGAAACCCATTTGCCAGAGCTGGAGGCAAGAGATGGAATATCCATAACAATGGAAGACATTGGAACTTCACGTGTTTGGAACATGCGCTATAGCACCAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTCGAGAACACTGGTGATTTTGTGAGAGCCAATGGCCTCCAAGAAGGAGATTTCATAGTCATATACTCAGATGTGAAGTGTGGAAAATATATGATAAGAGGAGTGAAAGTGAGGCAACAAGGTGTGAAACCAGAGACTAAAAAAGCAGGAAAATCGCAGAAAAACCAGAATGGGACTAATGCATCAAATCCAGCTGGAACTGCTGCCAATAATGGCAGGTCATCGCCACCGAAACCAAAAGCTGAAAAAAAGTAG 2283 0.4713 MECEVKLQEGDLHAEVVTEPNPVGFDNMEEEQTLSVAEREMWLNGDQDEILGVNEASMFYDDFPTLPDFPCMSSSSSSSSAPPLPLKTMTCSTTTTATTTTSSSSSSSSWAVLRSDVEEDVEKNHGNGYMHDQFDATALSSTASMEISQQQNPDPGLGGSVGECMEDVMDTFGYMELLEANDFFDPASIFENEESENPLIEFGSLEEQVSLQEGQQEMMHQRENIEDDRKVPVCEEIKGEEDGGDGGGGVVDDEMSNVFLEWLKSNKDSVSANDLRNVKLKKATIESAAKRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKDNSDNVNDPLQAQIQDPSAQNNQNTHTSGSFAPESNSCFNNQTPWLSPQTFGTDQTPIMVPSQPYSQPMVGYVGDPYTSGSPSNNITATHNHNNNNPYQPGTDQYHMLESAHSWPHSQFNVPSPYNQSYGDNGLFTPGGFGGYGNNQYPYQFFHGPGDKLMRLGPSATKEARKKRMARQRRFLSHHRNHNGNHHQNQGSDPHTRLGSDNCTTGLVAPHQANSAAANWMYWQAMAGGSAGPLAQVVPTDPLAGQTVVDRSTMHTQNSHQNRAASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYSTRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQQGVKPETKKAGKSQKNQNGTNASNPAGTAANNGRSSPPKPKAEKK* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0492 760 MobiDBLite consensus disorder prediction 74 111 - -
Vra4g0492 760 ProSiteProfiles B3 DNA-binding domain profile. 610 714 IPR003340 GO:0003677
Vra4g0492 760 SMART B3_2 610 714 IPR003340 GO:0003677
Vra4g0492 760 CDD BfiI_C_EcoRII_N_B3 608 711 - -
Vra4g0492 760 Gene3D - 606 727 IPR015300 -
Vra4g0492 760 MobiDBLite consensus disorder prediction 506 530 - -
Vra4g0492 760 MobiDBLite consensus disorder prediction 515 530 - -
Vra4g0492 760 SUPERFAMILY DNA-binding pseudobarrel domain 609 707 IPR015300 -
Vra4g0492 760 MobiDBLite consensus disorder prediction 727 750 - -
Vra4g0492 760 MobiDBLite consensus disorder prediction 314 367 - -
Vra4g0492 760 Pfam B3 DNA binding domain 611 709 IPR003340 GO:0003677
Vra4g0492 760 MobiDBLite consensus disorder prediction 716 760 - -
Vra4g0492 760 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 754 IPR044800 GO:0003700
Vra4g0492 760 MobiDBLite consensus disorder prediction 327 367 - -
Vra4g0492 760 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0492 Vra-Chr4 8991257 8995508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0492 39 738 B3 DNA Binding Superfamily AT3G24650 48.193 1.85e-165 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra4g0492 B3 7.7e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0492 - - pvu:PHAVU_008G122100g 1250.34