Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0469 ATGTCAGCTTCCGATAGCAGCCGAGCCCGTGTGCTAGCCGGCTTGACCCTCGACGACGTGTTAGCGAACCAGAAGAGACCTTCCTCGACGCCGCCCAGGGAACCACCGCCCAAGAACCGAACCCTACTTGACATCATCAAAGACGACGAATCCAACAAAAAGGATCGCAGATCTTGGAAAGCCTTCAAGGACAAGCTTAGGCTAAAGCGCGCAGGGTCTGCTTGGATATCGACAATTCATATCCCGACTTCGGATGTTCCTATTCCTAACCCGAATAGTAGAATCTTTACCCAGTTAGGTCGCCGTAACTCGGTCCGATTCCCCACTCAGACTACAACTCCGACTCTGTCGCTGACTCAGACTCCGGCTCAGTCCGACTCTGACATGTCATCGAACTACATGACTCACCAGGTCGAGGACCTCAACCCCGCCACCGAAGACTCCGGTCCTCCGGCCACCGCATCCCCTGCAATCCGCCCCACGTTTAGCCGCCGCGGCTCCACCCGCTTCACCGGCGAAACCGCCGAGAACAACACCGCCGGGACCCTGCGGCCGCAGCTCTCGTTGCGGAGCTCGACCAACATGCCGACGGCGGAGCCGTACCGGCGGGGGAGGGTGGTGACCTTCCGCGACAGCTTCGACGACGAGGATGGGGAGGAGGATGGGGAGAAGCCGGGGGAGGGGAGGGCGCTGTCAGCGAGGGAGGCGGTTGCAGCGCAGGAGGCGTCGGAAGCGGCGGCGCAGGAGGCGGAGGCGGAGGAGGAGCAGGCGCCGGTGATGATGTCGCTGATGGACTTGTTAGAGGAGACTGATAGGGAAATGGGGCTTGAAGGATCAAGGTATATATTGAGTGATGATGAGGATTTTGATGAGGATGCAGATGATGATGGTGAAGATGGAGATGGAGGGGGTTCCATGGAGCACACTTGCTGTATTTGCATGGTCAGGCATAAGGCTGCTTCTTTTATACCATGTGGCCACACTTTCTGCAGGATGTGTTCAAGGGAGCTTATGATTAGTAGGGGGAATTGCCCACTCTGCAACAATTTCATTTTGGAGATTCTTGAAATTTTTTAA 1077 0.5673 MSASDSSRARVLAGLTLDDVLANQKRPSSTPPREPPPKNRTLLDIIKDDESNKKDRRSWKAFKDKLRLKRAGSAWISTIHIPTSDVPIPNPNSRIFTQLGRRNSVRFPTQTTTPTLSLTQTPAQSDSDMSSNYMTHQVEDLNPATEDSGPPATASPAIRPTFSRRGSTRFTGETAENNTAGTLRPQLSLRSSTNMPTAEPYRRGRVVTFRDSFDDEDGEEDGEKPGEGRALSAREAVAAQEASEAAAQEAEAEEEQAPVMMSLMDLLEETDREMGLEGSRYILSDDEDFDEDADDDGEDGDGGGSMEHTCCICMVRHKAASFIPCGHTFCRMCSRELMISRGNCPLCNNFILEILEIF* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0469 358 MobiDBLite consensus disorder prediction 107 142 - -
Vra4g0469 358 SUPERFAMILY RING/U-box 309 354 - -
Vra4g0469 358 MobiDBLite consensus disorder prediction 18 41 - -
Vra4g0469 358 PANTHER OS01G0917900 PROTEIN 6 358 - -
Vra4g0469 358 MobiDBLite consensus disorder prediction 107 185 - -
Vra4g0469 358 Coils Coil 233 256 - -
Vra4g0469 358 Pfam Zinc finger, C3HC4 type (RING finger) 307 351 - -
Vra4g0469 358 PANTHER OS01G0917900 PROTEIN 6 358 - -
Vra4g0469 358 SMART ring_2 310 347 IPR001841 -
Vra4g0469 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 358 IPR013083 -
Vra4g0469 358 MobiDBLite consensus disorder prediction 160 185 - -
Vra4g0469 358 CDD RING-HC 310 347 - -
Vra4g0469 358 MobiDBLite consensus disorder prediction 208 229 - -
Vra4g0469 358 ProSiteProfiles Zinc finger RING-type profile. 310 348 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0469 Vra-Chr4 8291174 8293248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0469 7 358 C3H Transcription Factor Family AT3G07120 35.052 4.84e-53 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0469 - - var:108328735 582.793