Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0459 ATGATCGGAACAATGGGTATCAGCAGCCATGCAAACCTGTTCTTTGTTTTGTTCATGCTGAGTTTTTATGTGTTGGACGTTGGTATTGCCACAGAAAGCATCACTTCATCACAATCCATCAAGGACTCAGAAACTCTAAGCTCCAAAGATGGTAACTTCACTTTCGGGTTCTTCACCCCTCCAAACTCCTCAGACCGATACGTTGGAATTTGGTGGAAGTCTCAATCCACCGTCTTATGGGTTGCTAATAGAAATCAATCACTGAATGATTCTTCAGGAGTTGTTACCTTTTCTGAAGATGGCAATCTTGTGGTGCTGAATGGACAGAATCAAGTTATTTGGTCAACATCTGTGTCAAACATCTCTACCGATACGACTGCCCAGCTTTCAGACGAGGGGAAGCTAAAACTCACAGAAACAACAACGGGAAACAGCTTATGGGATAGTTTTCAGCAACCTTCAAATACATTACTGCCCCAAATGAAAGTTTCAAGCAATAGAACAGGTAGGGGAGTAGGACTTACATCATGGAAGAACCCTTCTGATCCCTCTGTTGGGAGCTTCTCTTTGGGTGCTGTTGAACGCGGAAAAATCGTTCAAGTGTTTATCTGGAATGAAACTCGACCATACTGGCGCAGTGGTCCCTGGAGTGGTGGGGTCTTTACAGGGGTAGACCTGATGGCTAGTGCATATCTAAACAGTTTAACGGTTGTAGATGGTGAAGTCACTTACAACCCAGAAAGTGGATCTGAATTCGGAATTTTCGTTCTGAATTCTCAAGGTCAAGTTGAACAAAAATATTGGGATGATGAGCAGAAAGCACTAGAAGTTTCGTGGACGAGTAAACTATCGGATTGTGATGTTTATGGTGTATGCGGGTCGTTCGCAATCTGTGATGCACAGAGCCAAGGAACAAATGGCTCACCAATATGCAGCTGTTTGAAAGGGTTTGAGCCAAACAACAAAGAGGAATGGGATGCACAAAACTGGACTAGTGGATGTTTTAGGAGCACACCTTTGCAGTGTGAAAGAGCCAAAGATCAAAACACAACTATAGATACAAATGCAGATCAATTTTTGGAACTGCAAAAGGTGAAAGTTCCAGATTTTTCTGAATGGTCTAGTGCTGAGCCAGAGACATGCAGAAGCCAATGCTTGCAGAATTGCTCTTGTGTTGCGTATTCTCACGATGATGGGATTGGTTGTATGTCTTGGAATGATAATCTACTAGACCTCCAACAACTCTCAAATCGAGGACTTCATCTGTATGTTCGTGTAGACCCTTCTCAACTTCAACATGGGAAAAAGACAACAATTATCATTACAGTAACAGTGATAATAGGAATTGTGATCATTGTCACTTGTGCATGTGTAATATGGAGGAGGACTTCCTGTCGCCCAGCAATGAAAAGGGGCAAGAAAGGTTTCTTATGTTTCAAGAATGATGAACCATTAAAAGAAACAGGCAACAAAGTATTTGAAGAATTGTCACGAGTTAAACTACAGGAGCTGCTCTTGTTTGATTTCGAAAAGCTTGCAACAGCCACAAACAACTTCCACCAGTCCAACAAACTTGGGCAGGGTGGTTTTGGTCCTGTGTACATGGGGAAACTGCAAGATGGACAAGAAATAGCAGTTAAAAGACTTTCTAGAGCCTCTGGACAAGGTCTAGAAGAATTCATGAACGAAGTAATCGTGATTTCCAAACTTCAGCACCGTAATCTTGTAAGACTTCTTGGATGCTGTATTGAAGGTGACGAAAAGATGCTACTATATGAATATATGCCAAACAAAAGTCTTGATGTGTTTATTTTTGATCCAAAAAAACATAAACTCCTAGATTGGAGGAAGCGCTGCTCTATAATAGAAGGAATAGCTCGAGGGTTGCTTTATCTTCATAGAGACTCTAGACTAAAAATTATACACAGAGATTTGAAGGCAAGTAACATCTTGTTAGATGATGAACTGAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAAGAACTGAAGATCATGCTAATACTAATAGGATTGTCGGAACATATGGTTACATTTCCCCTGAATATGCAATGCAAGGACTGTTTTCAGAGAAATCGGATGTCTTTAGCTTTGGTGTTTTGCTGCTAGAGATTGTTAGTGGAAGAAGAAACACAAGTTTTTATGATGATGAGCATTCTCTTACCCTTCTAGGATTTACCTGGGCACAGTGGAAAGAAGGCAATATGTTATCGTTAGTAGATTCAGAAATATATGATCCTAATGATCATGAAGACATGTTAAGGGTCATTCACATAGGACTTTTATGTGTACAAGAACTTGCTTCAGACAGACCCACAATGGCTACAGTTGTTTCTATGCTTAATAGTGATGTTGTCTTTCTTCCTCCTCCAAGTCAACCTGCATTCATCCGGGTGCAAAATGTGGTTAATTCAGAGTCGGCTGAAGAAAGTCAAAGAGTTTGTTCCGTGAATACAATTAGTATTACAAAAATCTATGGTAGGTAG 2514 0.4053 MIGTMGISSHANLFFVLFMLSFYVLDVGIATESITSSQSIKDSETLSSKDGNFTFGFFTPPNSSDRYVGIWWKSQSTVLWVANRNQSLNDSSGVVTFSEDGNLVVLNGQNQVIWSTSVSNISTDTTAQLSDEGKLKLTETTTGNSLWDSFQQPSNTLLPQMKVSSNRTGRGVGLTSWKNPSDPSVGSFSLGAVERGKIVQVFIWNETRPYWRSGPWSGGVFTGVDLMASAYLNSLTVVDGEVTYNPESGSEFGIFVLNSQGQVEQKYWDDEQKALEVSWTSKLSDCDVYGVCGSFAICDAQSQGTNGSPICSCLKGFEPNNKEEWDAQNWTSGCFRSTPLQCERAKDQNTTIDTNADQFLELQKVKVPDFSEWSSAEPETCRSQCLQNCSCVAYSHDDGIGCMSWNDNLLDLQQLSNRGLHLYVRVDPSQLQHGKKTTIIITVTVIIGIVIIVTCACVIWRRTSCRPAMKRGKKGFLCFKNDEPLKETGNKVFEELSRVKLQELLLFDFEKLATATNNFHQSNKLGQGGFGPVYMGKLQDGQEIAVKRLSRASGQGLEEFMNEVIVISKLQHRNLVRLLGCCIEGDEKMLLYEYMPNKSLDVFIFDPKKHKLLDWRKRCSIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDDELNPKISDFGMARIFGRTEDHANTNRIVGTYGYISPEYAMQGLFSEKSDVFSFGVLLLEIVSGRRNTSFYDDEHSLTLLGFTWAQWKEGNMLSLVDSEIYDPNDHEDMLRVIHIGLLCVQELASDRPTMATVVSMLNSDVVFLPPPSQPAFIRVQNVVNSESAEESQRVCSVNTISITKIYGR* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0459 837 Pfam S-locus glycoprotein domain 211 320 IPR000858 GO:0048544
Vra4g0459 837 ProSiteProfiles Bulb-type lectin domain profile. 31 150 IPR001480 -
Vra4g0459 837 SMART blect_4 37 153 IPR001480 -
Vra4g0459 837 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 183 IPR036426 -
Vra4g0459 837 SUPERFAMILY Protein kinase-like (PK-like) 504 816 IPR011009 -
Vra4g0459 837 CDD PAN_AP_plant 338 426 - -
Vra4g0459 837 PANTHER - 16 827 - -
Vra4g0459 837 PIRSF SRK 4 837 IPR024171 GO:0004674
Vra4g0459 837 SMART ntp_6 354 426 IPR003609 -
Vra4g0459 837 Gene3D - 27 151 IPR036426 -
Vra4g0459 837 SMART serkin_6 519 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0459 837 CDD STKc_IRAK 525 791 - -
Vra4g0459 837 Pfam PAN-like domain 354 412 IPR003609 -
Vra4g0459 837 Gene3D Transferase(Phosphotransferase) domain 1 595 795 - -
Vra4g0459 837 ProSiteProfiles Protein kinase domain profile. 519 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0459 837 Pfam D-mannose binding lectin 77 178 IPR001480 -
Vra4g0459 837 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 16 827 - -
Vra4g0459 837 CDD B_lectin 37 153 IPR001480 -
Vra4g0459 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Vra4g0459 837 Gene3D Phosphorylase Kinase; domain 1 492 594 - -
Vra4g0459 837 ProSiteProfiles PAN/Apple domain profile. 342 427 IPR003609 -
Vra4g0459 837 Pfam Protein tyrosine and serine/threonine kinase 520 790 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0459 Vra-Chr4 8146668 8150290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0459 428 837 Receptor kinase-like Gene Family AT4G05200 48.095 4.82e-124 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra4g0459 PK_Tyr_Ser-Thr 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0459 - - gsj:114424251 1170.22