Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0458 ATGAAAAGGGGCAAGAAAGGTTTCGTATGTTTCAAGAATGATGAACCATTAAAACAAACAGGCAACAAAGTATTTGAAGAATTGTCACGAGTTAAACTACAGGAGCTGCTCCTGTTTGATTTAGAAAAGCTTGCGACAGCCACAAACAACTTCCACCAGTCCAACAAACTTGGGCAGGGTGGTTTTGGTCCTGTGTACAAGGGGAAACTGCAAAATGGACAAGAAATAGCCGTTAAAAGACTCTCTAGAGCCTCTGGACAAGGTCAAGAAGAATTCATGAATGAAGTAATGGTCATTTCCAAGCTTCAACACCGTAATCTTGTAAGACTTTTTGGCTGTTGCATTGAAGGTGACGAAAAGATGTTGATCTATGAATACTTGCCAAATAAAAGCTTGGATGTTTTAATCTTTGATCGATCAAAAAGTAAACTCCTAGATTGGAGGAAGCGCTGTGACATAATAGAAGGAATAGCTCGAGGGTTGCTTTATCTTCACAGGGACTCCAGACTAAGAATCATACATAGAGATTTGAAGACAAGTAATATCTTGTTAGATGAAGAGCTAAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAGGAACAGAAGATCACGCTAATACTAATAGGATTGTTGGGACATATGGCTACATGTCCCCTGAATATGCAATGCAAGGACTGTTTTCAGAGAAATCGGATGTCTTTAGCTTTGGTGTTTTGTTGCTAGAGATTGTTAGTGGAAGAAGAAACTCAAGCTTTTATGGTGATGAGCATTCTCTTACCCTTTTAGGATATACCTGGGCACAGTGGAAAGAAGGCAATATATTATCTTTAATAGATTCAGAAATATATGAACCTAATGATCATGAAGATATGTTAAGGGTCATTCACATAGGACTTTTATGTGTACAAGAACTTGCTTCAGACAGACCCACAATGGCTACGGTTGTTTCTATGCTTAATAGTGATGTTGTGTTTCTTCCTCCTCCAAGTCAACCTGCATTCATCCTGGTGCAAACTGTGACTACGTCAGAGTTGTCTGAAGAAAGACAACGAGTTTGTTCCATGAATATTATTAGTATTACAGAAATCCGTGGTAGGTAG 1110 0.3856 MKRGKKGFVCFKNDEPLKQTGNKVFEELSRVKLQELLLFDLEKLATATNNFHQSNKLGQGGFGPVYKGKLQNGQEIAVKRLSRASGQGQEEFMNEVMVISKLQHRNLVRLFGCCIEGDEKMLIYEYLPNKSLDVLIFDRSKSKLLDWRKRCDIIEGIARGLLYLHRDSRLRIIHRDLKTSNILLDEELNPKISDFGMARIFGGTEDHANTNRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLLLEIVSGRRNSSFYGDEHSLTLLGYTWAQWKEGNILSLIDSEIYEPNDHEDMLRVIHIGLLCVQELASDRPTMATVVSMLNSDVVFLPPPSQPAFILVQTVTTSELSEERQRVCSMNIISITEIRGR* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0458 369 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 339 - -
Vra4g0458 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Vra4g0458 369 Gene3D Phosphorylase Kinase; domain 1 14 126 - -
Vra4g0458 369 ProSiteProfiles Protein kinase domain profile. 51 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0458 369 SMART serkin_6 51 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0458 369 Gene3D Transferase(Phosphotransferase) domain 1 127 327 - -
Vra4g0458 369 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 32 339 - -
Vra4g0458 369 Pfam Protein tyrosine and serine/threonine kinase 52 322 IPR001245 GO:0004672|GO:0006468
Vra4g0458 369 SUPERFAMILY Protein kinase-like (PK-like) 36 349 IPR011009 -
Vra4g0458 369 CDD STKc_IRAK 57 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0458 Vra-Chr4 8144357 8146021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0458 35 369 Receptor kinase-like Gene Family AT4G21410 57.059 2.27e-127 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra4g0458 PK_Tyr_Ser-Thr 7.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0458 - - vra:111241476 728.783