Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0456 ATGGATTACACCAACTGCACAAACTTGTTCTTCGTTTTGATCATATCATGTTTTCTTTTTTCAGATGTTGTTGTTACTGCCACAGACACCATCACATCATCTCAGTTCATCAAGGATAATGAGACTATAACCTCCACTGGTGGCAACTACGCCTTTGGGTTCTTCACCCCTCAAAATTCCACAAAACGTTATGTGGGGATTTGGTGGCAACCCAAATTCACTGTCATATGGGTGGCTAACAGAAACCAACCACTGAATGATTCTTCTGGAGTTGTTACCATATCTAAAGATGGCGATCTTGAGGTGTGGAATGGTCAGAATCATGTAATTTGGTCAACAAATGTGTACAGTGTCGGATCCAACACTACTTCTAAACTCTTGGATTCTGGGAACCTTGTGCTTCAGGAAAGCTCATCAGGAAGAACTATATGGGAGAGTTTCCACCATCCTACAAATGTTTTGTTACCCAATATGAAGATTTCAACTAACAAAGTAACAGGAGAGAAAGTAAAACTAACATCATGGAAAAGCCCTTCTGATCCATCCACTGGTAGCTTTTCTTTAAGTGTTGAACGCCTTAGTATACCTGAAGTGTTCGTCTGGAATGAAACTCGTCAATTATGGCGAACTGGTCCATTGAATAGTAAGATCTTTACAGGGCTGCCCTATATGAAAACGTATTATCTGGAAGGCGGACATGTTGGAGATGACGGGGAAGGAAATGTTGAATTCCATTACAAGGGAGTACAAGAGATTGGCTTCCTAATCCATATTCTGAATTCAACGGGCAATTATGAAGAGAGATTGTGGAATGGAGAGAGGAAAGAATGGGTTGTCACATGGAATAGCCATCAATTTGAGTGTGATGTTTATGGTGTATGTGGACCTTTTGCAGTTTGTAATTCTGAAAGCTCACCAACATGTAGCTGTTTGAAAGGGTTTGAACCCCGAAACAAAGAAGAATGGAATAGACAAAACTGGACTAGTGGATGTTTCAGGAGAACACCTCTGCACTGTGAAAGAGCCAGCATCCAAAACAAAAGTGCAGAACATACAGAAGATGTATTTTTTGAAATTAAGATGGTCAAAGTTCCAGATTTTGCTGATGGCTCATCGCTCAGACTTCAACCAGACACTTGCAGAAGCCGTTGTTTGGAAAATTGTTCATGCATTGCATACTCATATGATGCTGATATTGGTTGCATGTCTTGGACTGAGAATCTAATTGACATAACACAATTCTCAAACGGAGGACTTGATCTACATGTTCGAGTAGCCTACACAGAACTTGAGAAAGAGAGAAACAGGACAATCATAATTGTTGTTACAGTGACAGCAGGAACTACCTTAATTCTCATTGGTGCATATATCATGTGGAAAAGGATTTCTACTGGCCACGAGATCATCAAAAGATTCCTTCCGTTTAATGGAGATGAAGCACCTGCAGAATATATAAATGACAATGCATTTGGTGATCTGCCACAGGTCGAACTCCAGGAAACATTTAGTTTTGAAAACCTAGTAACTGCCACAAACAAATTTCACCCATCGAACAAACTAGGAGAGGGTGGTTTTGGTCCGGTATACAAGGGGCAATTGCAAGATGGCAGAGAAATTGCAGTTAAAAGACTTTCTAGAGCATCTGGACAAGGTCAAGAAGAATTCATGAATGAAGTGGTGGTCATTTCCAAGCTTCAACACCGTAATCTTGTAAGACTTTTTGGCTGCTGTATTGAAGGTGACGAAAAGATGTTGATCTATGAATACTTGCCAAATAAAAGCTTGGACAGATATATCTTTGATCCATCAAAAGATAAGGTTCTTTGTTGGAGAAAACGCTTTAGCATAATAGAAGGAGTTGCTCGAGGAATGCTTTATCTTCATAGAGATTCCAGGCTAAAAATCATCCACAGGGACTTAAAGGCAAGTAATATCTTACTAGACGTGGAACTAAATCCAAAAATATCTGACTTCGGTATGGCTAGAATCTTTGGTGGGAATGAGGATGAGGCAAATACTAAAAGAATTGTTGGAACATATGGCTATATGTCTCCTGAGTATGCAATGCAAGGATCGTTCTCTGAAAAATCAGACGTCTTTAGTTTTGGGGTTTTGCTACTTGAGATTGTTAGTGGAAGACGAAATTCAAGCTTTTATGATGAAGAAAACTGTCTTACCCTTTTAGGATTTGCCTGGATACAGTGGACAGAAGACAACATTCCCTCTCTAATAGATCCAGGAATATATGATCCTAGCCTTCATAAATATTTTTATACGTGCATACACATAGGACTTCTATGTGTCCAAGAATTTCCAGCAGATAGGCCTACTATGGCTACTGTAATTTCTATGCTAGACAGTGAGATTTCGGATCGTCCTCCTCCAATGAAACCTGCATTCATCCTGAGGGAAAATATGTTAAGCTCACTTCCCTATGTAAGAGGAAATGACTTGAACTCCCTCAACACTGTCAGTATTTCGGACATACAAGGCAGATAG 2499 0.3978 MDYTNCTNLFFVLIISCFLFSDVVVTATDTITSSQFIKDNETITSTGGNYAFGFFTPQNSTKRYVGIWWQPKFTVIWVANRNQPLNDSSGVVTISKDGDLEVWNGQNHVIWSTNVYSVGSNTTSKLLDSGNLVLQESSSGRTIWESFHHPTNVLLPNMKISTNKVTGEKVKLTSWKSPSDPSTGSFSLSVERLSIPEVFVWNETRQLWRTGPLNSKIFTGLPYMKTYYLEGGHVGDDGEGNVEFHYKGVQEIGFLIHILNSTGNYEERLWNGERKEWVVTWNSHQFECDVYGVCGPFAVCNSESSPTCSCLKGFEPRNKEEWNRQNWTSGCFRRTPLHCERASIQNKSAEHTEDVFFEIKMVKVPDFADGSSLRLQPDTCRSRCLENCSCIAYSYDADIGCMSWTENLIDITQFSNGGLDLHVRVAYTELEKERNRTIIIVVTVTAGTTLILIGAYIMWKRISTGHEIIKRFLPFNGDEAPAEYINDNAFGDLPQVELQETFSFENLVTATNKFHPSNKLGEGGFGPVYKGQLQDGREIAVKRLSRASGQGQEEFMNEVVVISKLQHRNLVRLFGCCIEGDEKMLIYEYLPNKSLDRYIFDPSKDKVLCWRKRFSIIEGVARGMLYLHRDSRLKIIHRDLKASNILLDVELNPKISDFGMARIFGGNEDEANTKRIVGTYGYMSPEYAMQGSFSEKSDVFSFGVLLLEIVSGRRNSSFYDEENCLTLLGFAWIQWTEDNIPSLIDPGIYDPSLHKYFYTCIHIGLLCVQEFPADRPTMATVISMLDSEISDRPPPMKPAFILRENMLSSLPYVRGNDLNSLNTVSISDIQGR* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0456 832 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Vra4g0456 832 ProSiteProfiles Protein kinase domain profile. 514 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0456 832 Pfam Protein tyrosine and serine/threonine kinase 517 784 IPR001245 GO:0004672|GO:0006468
Vra4g0456 832 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 831 - -
Vra4g0456 832 ProSiteProfiles PAN/Apple domain profile. 339 426 IPR003609 -
Vra4g0456 832 Pfam PAN-like domain 351 411 IPR003609 -
Vra4g0456 832 SUPERFAMILY Protein kinase-like (PK-like) 500 810 IPR011009 -
Vra4g0456 832 PIRSF SRK 1 832 IPR024171 GO:0004674
Vra4g0456 832 Gene3D Phosphorylase Kinase; domain 1 493 589 - -
Vra4g0456 832 Gene3D Transferase(Phosphotransferase) domain 1 590 793 - -
Vra4g0456 832 Pfam D-mannose binding lectin 74 176 IPR001480 -
Vra4g0456 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Vra4g0456 832 ProSiteProfiles Bulb-type lectin domain profile. 28 147 IPR001480 -
Vra4g0456 832 Gene3D - 22 148 IPR036426 -
Vra4g0456 832 SMART serkin_6 514 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0456 832 SMART blect_4 34 150 IPR001480 -
Vra4g0456 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 181 IPR036426 -
Vra4g0456 832 CDD PAN_AP_plant 335 426 - -
Vra4g0456 832 CDD STKc_IRAK 520 786 - -
Vra4g0456 832 SMART ntp_6 351 425 IPR003609 -
Vra4g0456 832 CDD B_lectin 34 150 IPR001480 -
Vra4g0456 832 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 23 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0456 Vra-Chr4 8110315 8113734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0456 435 800 Receptor kinase-like Gene Family AT4G23230 49.727 1.98e-121 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra4g0456 PK_Tyr_Ser-Thr 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0456 - - mtr:MTR_7g056430 1140.95