Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0455 ATGCGTTTCAGCAACCATGCAAACCTGTTCTTTGTTCTGTTCATACTGTGTTTTTATGTGTTGGACGTTTGTATTGCCATAGACAGCATCACATCATCACAATCCATCAAGGACCCTGAAACTCTAAGGTCCAAAGATGGTAACTTCACTTTGGGGTTCTTCACCCCTCAAAACTCCACAAACCGCTATGTTGGAATTTGGTGGAAGTCTCAGTCTACAGTTATATGGGTTGCCAACAGAAACCAAGCACTGAATGATTCTTCTGGAATTGTTACAATATCTGAAGATGGCAATCTTGTTGTGCTGAATGGACAGAAACAAGTAATTTGGTCAACAAATGTGTCCAAAATATTATCCAATACAAGTTCAGAGTTTTCAGACTCTGGTAAGCTAGTTCTCATGGAAACCACAACAGGAAACATCTTATGGGATAGTTTTCAACAACCTTCAGATACACTCTTGCCCGGCATGAAACTTTCAACCAACACAAGAACTAATAAGAAAATTGAACTTACATCATGGAAAAGCCCTTCTAATCCCTCTATTGGGAGCTTCTCTTCTGGGGTTGTTCAACGCCGTGATATTCTTGAAGTGTTTATTTGGAATGAAACTCGACCATACTGGCGCAGTGGTCCATGGGATGGTGGGGTATTTACAGGGATACCGACCATGTCAACGTATCTTAATGGTTTCAAAGGTGGGGATGATGGCGAAGGAAATATAGATATCTATTACACAGTGCCAAGTGAATTAGATTTTGTAATTTATATGTTGAACTCTAAAGGCCAATATGAACAAAAACTGTGGGATGCTGAGAAGAGCGAAATGGGAATTAGATGGACTAGTAAAGAGTCAGATTGTGATGTTTATGGTATGTGTGGACCATTCACAATCTGTAATGCACAGAGCAAACCAATATGTAGCTGTTTGAAAGGATTTGAACCGAGGAACGAGGAGGAATGGAATGGAAAAAACTGGACTGGTGGATGTGTTAGGAGAACACCTTTGAAGTGTGAAAGGGTAAGAGACCAAAACACAAGTACGAATGCAAAGGAAGATGAATTTTTTAAACTGCAGATGGTTAAAGTTCCTGATTTTTCAGAAGGGTCTCCTGTTGAGACTGACATATGCAGAAACCAATGCTTGGAGAATTGCTCTTGTGTTGCTTATTCTCATGATGAGAAGATTGGTTGCATGTCTTGGACTGGGAATCTACTAGATATACAACAATTCTCAGAAGGAGGACTTGATCTACATCTTCGTGTAGCCTACTCTGAACTTGATAAAGGGTCAAAAAAAAAAATCATCATTACAACAGCAGTGATAGTAGCAACTGTGATCATGGTTACTGGTGGATATTTCATGTGGAGGACTTCCAATCCTCCAGTAAGGAAAGGGAAGAACGATGCTTTTATAGAATTTAATAATGGTGGAACACCAGAACATGAAAGCCATAGTGTAATTGAAGAACTTTCACAAGTTAAACTACATGAGCTGTTACTATTTGATTTTAAAATGGCTGCAGCAGCCACAGACAACTTCCATCTTTCCAACAAACTTGGGCAAGGTGGATTTGGTCCTGTGTACAAGGGGCAACTGGAAGATGGACAGGAAATAGCAGTTAAAAGACTTTCTAGAGCCTCTGGACAAGGTCTAGAAGAATTCATGAACGAAATAGTCGTGATTTCCAAGCTTCAACATCGCAATCTTGTAAAACTTTTTGGCTGCTGTGTAGAAGGTGATGAGAAGATGTTGATATATGAATACATGCCAAACAAAAGTTTGGATGTATTTATCTTTGATCCATCAAAGTGTAAACTCCTAGATTGGAGGAAGCGCAGTAACATAATAGAAGGAATAGCTCGAGGACTACTTTATCTACACAGAGACTCCAGACTAAAAATAATACACAGAGATTTGAAGGCGAGTAATATATTGCTAGATGAAGAACTAAATCCAAAAATATCAGATTTTGGTATGGCTAGAATCTTTGGTGGAACTCAAGATCAAGTCAATACTAGTAGGGTTGTTGGAACCTATGGCTACATGTCTCCTGAATATGCAATGGAAGGACTATTTTCAGAAAAATCAGATGTGTTTAGCTTTGGTGTTCTAGTACTAGAGATTGTTAGTGGAAGAAGAAGCTCAGGTTTTTACGGCAATGTGCATGCTCTTGGCCTTTTAGGATTTGCTTGGACACAGTGGAAGGAAGGAAATGCATTATCTTTAATAGATCCAGAACTCTATGATCCTATTCATCATAGAGATATCCTAAGGTGCATACACATAGCTCTTTTATGTGTGCAAGAACTTTCTGTAGACAGACCTACTATGGCTACAGTAATTTCTATGCTCAGCAATGACTTTGTGCTTCCTGCTCCAAGTCAATCTACATTCATTCAGCGACAAAAAATGTTGAATTCGACTTCATCGGAAGAAACACAGAGATTTCGCTCCATCAATGTTGTTAGTGTTACCGAAATTCAAGGTAGATAG 2496 0.3906 MRFSNHANLFFVLFILCFYVLDVCIAIDSITSSQSIKDPETLRSKDGNFTLGFFTPQNSTNRYVGIWWKSQSTVIWVANRNQALNDSSGIVTISEDGNLVVLNGQKQVIWSTNVSKILSNTSSEFSDSGKLVLMETTTGNILWDSFQQPSDTLLPGMKLSTNTRTNKKIELTSWKSPSNPSIGSFSSGVVQRRDILEVFIWNETRPYWRSGPWDGGVFTGIPTMSTYLNGFKGGDDGEGNIDIYYTVPSELDFVIYMLNSKGQYEQKLWDAEKSEMGIRWTSKESDCDVYGMCGPFTICNAQSKPICSCLKGFEPRNEEEWNGKNWTGGCVRRTPLKCERVRDQNTSTNAKEDEFFKLQMVKVPDFSEGSPVETDICRNQCLENCSCVAYSHDEKIGCMSWTGNLLDIQQFSEGGLDLHLRVAYSELDKGSKKKIIITTAVIVATVIMVTGGYFMWRTSNPPVRKGKNDAFIEFNNGGTPEHESHSVIEELSQVKLHELLLFDFKMAAAATDNFHLSNKLGQGGFGPVYKGQLEDGQEIAVKRLSRASGQGLEEFMNEIVVISKLQHRNLVKLFGCCVEGDEKMLIYEYMPNKSLDVFIFDPSKCKLLDWRKRSNIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGMARIFGGTQDQVNTSRVVGTYGYMSPEYAMEGLFSEKSDVFSFGVLVLEIVSGRRSSGFYGNVHALGLLGFAWTQWKEGNALSLIDPELYDPIHHRDILRCIHIALLCVQELSVDRPTMATVISMLSNDFVLPAPSQSTFIQRQKMLNSTSSEETQRFRSINVVSVTEIQGR* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0455 831 Gene3D - 23 147 IPR036426 -
Vra4g0455 831 ProSiteProfiles Protein kinase domain profile. 514 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0455 831 PANTHER - 12 813 - -
Vra4g0455 831 PIRSF SRK 1 831 IPR024171 GO:0004674
Vra4g0455 831 Gene3D Phosphorylase Kinase; domain 1 478 589 - -
Vra4g0455 831 ProSiteProfiles PAN/Apple domain profile. 338 423 IPR003609 -
Vra4g0455 831 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Vra4g0455 831 CDD STKc_IRAK 520 785 - -
Vra4g0455 831 SMART serkin_6 514 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0455 831 Pfam Protein tyrosine and serine/threonine kinase 515 784 IPR001245 GO:0004672|GO:0006468
Vra4g0455 831 Pfam D-mannose binding lectin 73 175 IPR001480 -
Vra4g0455 831 CDD B_lectin 33 149 IPR001480 -
Vra4g0455 831 Gene3D Transferase(Phosphotransferase) domain 1 590 792 - -
Vra4g0455 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Vra4g0455 831 SMART blect_4 33 149 IPR001480 -
Vra4g0455 831 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 12 813 - -
Vra4g0455 831 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Vra4g0455 831 Pfam PAN-like domain 350 408 IPR003609 -
Vra4g0455 831 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 180 IPR036426 -
Vra4g0455 831 SUPERFAMILY Protein kinase-like (PK-like) 499 803 IPR011009 -
Vra4g0455 831 CDD PAN_AP_plant 334 423 - -
Vra4g0455 831 SMART ntp_6 350 422 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0455 Vra-Chr4 8091134 8094204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0455 435 799 Receptor kinase-like Gene Family AT4G23230 51.366 6.40e-124 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra4g0455 PK_Tyr_Ser-Thr 4.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0455 - - vun:114184390 1569.67