Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0454 ATGTTCTTTGTTCTGTTCATACTGTGTTGTTATGCTTTGGATATTGGCACTGCCACAGACACTATCAATTCATCTCAGTTCATCAAGGACAATGAAACTATAACCTCCGCTGGTGGCAACTTCACCTTGGGGTTCTTCACCCCTCAAAATTCTACCAATCGTTTTGTGGGAATTTGGTGGCACACCAATTCTACTGTCATTTGGGTGGCTAACAGGAACCAACCACTGAATGATTCTTCTGGAGTCGTTACCATATCTGAAGATGGCAATCTTGTGGTGTTGAATGGTCATAATCAAGTGATTTGGTCAACAAATGTGTCCACAACATCATCCAATACAAGTGCCCAGCTTTCAGATTCTGGTAAGCTAGTCCTCGCTGAAACCACAAGGGGAACATTGTGGGACAGTTTTCAGCAACCTTCAAATACGTTAATGCCCGGAATGAAAACTTTAACCAATGCAAAAACAGGTAGGAAAGTAGAACTTACAGCATGGAAAAGCCCTTCTAATCCCTCCGTGGGGAGCTTCTCTGCCAGTGTTCTTCGACGCATAAATATACTCGAAGTGTTCATTTGGAATGAAACTCGACCATACTGGCGCAGTGGTCCATGGAATGGTGTGATCTTTACAGGGACACCCATGTCATCGTTTCTTTATTCTTTCAAAGCTGGGGATGATGAGGAAGGAAATACATATTTCTATTACACAATACCAAGTCCGCTAGAGATTTTTATCTATGTGTTGAATTCGCGAGGCCAACTTATAAACCTATCGTGGAATGATACGAATGAAGAAATGGAAATTTCGTGGACAAGTCAGGAATCGGATTGTGATGTTTATGGAATATGTGGGCCATTCTCTATTTGTAATGCAAAAAACTCACCAATTTGCAGTTGTTTGAAAGGGTTTGAGCCGAGGAACAAAGAAGAATGGAATAGACAAAACTGGTCAAGTGGATGTGTTAGGAGCACACCTTTGCGTTGTGAAAAGGTCAGTCAAAACGTAAGTGCAAAGGAAGATGGCTTTTCGCAACTGCAAATGGTTAAAGTTCCTGATTTTCCAGAAGGGTCTCCTGTTGACTCTGAATGCAGAAGCCAATGCTTGGAGAATTGCTCTTGTGTTGCATATTCCTATGATATTGGAATTGGTTGCATGTCTTGGACCGGGAATCTCCTAGACATACAACAATTCTCAGAGGGAGGACTTGAGTTATATGTTCGTGTAGCCGATTCTGATCTTGAACATGGGACACATACAGCAATCATCATTGGAATTACAGTGACAGTAGTAACAATCATCATAGTTACTTGTGCATATGTCATGTGGAGGACTTCCAATCACCCAGCTAAAATATGGCACTCAATCAGATCAACAAGGAATAGGAACATCAAAGATTTCCAACGATTGAAAAAAGGTGAACAAGTTAAACTCCAGGAGCTGTTACTGTTTGATTTTGAAAGGCTTGCAACAGCCACAAACAACTTCCACCTGTCCAACAAACTTGGGCAGGGTGGTTTTGGTCCTGTGTACAAGGGGAAACTCCAAGATGGTAAGGAAGTAGCAGTTAAAAGACTTTCTAGAGCATCTGGACAAGGTCAAGAAGAATTCATGAATGAAGTAGTGGTCATTTCCAAGCTTCAACACCGTAATCTTGTAAGACTTTTTGGCTGCTGCATTGAAGGTGACGAAAAGATGTTGATCTATGAATACTTGCCAAATAAAAGCTTGGATGTGTTAATCTTTGATTGGAAGAAGCGCTATAGCATAATAGAAGGAATAGCTCGAGGATTGTTATATCTTCACAGGGACTCCAGACTAAGAATCATACACAGAGATTTGAAAACAAGTAATATCTTGTTAGATGAAGAGCTAAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAGGAACAGAAGATCACGCTAATACTAATAGGATTGTTGGGACATATGGCTACATGTCCCCTGAATATGCAATGCAAGGACTGTTTTCAGAGAAATCAGATGTCTTTAGCTTTGGTGTTTTGGCACTAGAGATTCTAAGTGGAAGAAGAAATTCAAGCTTTTATGATGATGAACATGTTCTTAGCCTCTTGGGATTTGCCTGGATACAATGGAAGGAAGACAACATATCTTCTTTAATAGATCCAGAAGTATATGATCGTAGTCACCATAAAGATATTTTAAGGTGCACTCACATAGCTCTTCTGTGTGTACAAGAACTTGCTATAGACCGACCCTCTATGGCTGCAGTAATTTCTATGCTTAACAGTGAGGTTGCGTTTCTTCGTCCTCCAAGTCAACCTGCATTCATCTTGAGGCAAAATCTGCTGAATTCGGAGTCATCTAAAGGAAGTCATAGATTTTCCTCCACCAACACTGCTAGCATTACAACTATCTCTGGAAGATAG 2418 0.4057 MFFVLFILCCYALDIGTATDTINSSQFIKDNETITSAGGNFTLGFFTPQNSTNRFVGIWWHTNSTVIWVANRNQPLNDSSGVVTISEDGNLVVLNGHNQVIWSTNVSTTSSNTSAQLSDSGKLVLAETTRGTLWDSFQQPSNTLMPGMKTLTNAKTGRKVELTAWKSPSNPSVGSFSASVLRRINILEVFIWNETRPYWRSGPWNGVIFTGTPMSSFLYSFKAGDDEEGNTYFYYTIPSPLEIFIYVLNSRGQLINLSWNDTNEEMEISWTSQESDCDVYGICGPFSICNAKNSPICSCLKGFEPRNKEEWNRQNWSSGCVRSTPLRCEKVSQNVSAKEDGFSQLQMVKVPDFPEGSPVDSECRSQCLENCSCVAYSYDIGIGCMSWTGNLLDIQQFSEGGLELYVRVADSDLEHGTHTAIIIGITVTVVTIIIVTCAYVMWRTSNHPAKIWHSIRSTRNRNIKDFQRLKKGEQVKLQELLLFDFERLATATNNFHLSNKLGQGGFGPVYKGKLQDGKEVAVKRLSRASGQGQEEFMNEVVVISKLQHRNLVRLFGCCIEGDEKMLIYEYLPNKSLDVLIFDWKKRYSIIEGIARGLLYLHRDSRLRIIHRDLKTSNILLDEELNPKISDFGMARIFGGTEDHANTNRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLALEILSGRRNSSFYDDEHVLSLLGFAWIQWKEDNISSLIDPEVYDRSHHKDILRCTHIALLCVQELAIDRPSMAAVISMLNSEVAFLRPPSQPAFILRQNLLNSESSKGSHRFSSTNTASITTISGR* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0454 805 Pfam PAN-like domain 337 394 IPR003609 -
Vra4g0454 805 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 4 786 - -
Vra4g0454 805 MobiDBLite consensus disorder prediction 784 805 - -
Vra4g0454 805 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 171 IPR036426 -
Vra4g0454 805 Pfam D-mannose binding lectin 65 166 IPR001480 -
Vra4g0454 805 ProSiteProfiles PAN/Apple domain profile. 328 409 IPR003609 -
Vra4g0454 805 SUPERFAMILY Protein kinase-like (PK-like) 483 784 IPR011009 -
Vra4g0454 805 CDD STKc_IRAK 501 759 - -
Vra4g0454 805 PANTHER - 4 786 - -
Vra4g0454 805 SMART blect_4 25 140 IPR001480 -
Vra4g0454 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Vra4g0454 805 Gene3D - 14 138 IPR036426 -
Vra4g0454 805 PIRSF SRK 1 805 IPR024171 GO:0004674
Vra4g0454 805 Pfam Protein kinase domain 495 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0454 805 Gene3D Phosphorylase Kinase; domain 1 455 568 - -
Vra4g0454 805 CDD PAN_AP_plant 324 409 - -
Vra4g0454 805 ProSiteProfiles Bulb-type lectin domain profile. 19 138 IPR001480 -
Vra4g0454 805 ProSiteProfiles Protein kinase domain profile. 495 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0454 805 SMART serkin_6 495 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0454 805 SMART ntp_6 337 408 IPR003609 -
Vra4g0454 805 Gene3D Transferase(Phosphotransferase) domain 1 569 764 - -
Vra4g0454 805 CDD B_lectin 25 140 IPR001480 -
Vra4g0454 805 Pfam S-locus glycoprotein domain 199 306 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0454 Vra-Chr4 8071440 8074574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0454 469 805 Receptor kinase-like Gene Family AT4G11530 53.276 4.18e-118 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra4g0454 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0454 - - var:108327403 1494.18