Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0449 ATGTCTCTTCCAACACTCGTAGATACTAAGGAAAACACCACCAACACTACTTTCCCTAAACTCAAGATCAAAGATGGAGGAACACCCTCTTCTTCGAGAGCTCCTTCTTCTTCACACAACTCTTTCCCTCCCACAGAAGATAGCGATGAAGATGTGTTCACTGTTCCAGATGTGGAAACTGCAGGAAGTGTAGATTGTGCAGGCAGAAATGGATGTAGCAGTAATGTTAATGAAAGTAAGTTGAAAGATCCACATATACATTATTCTGCTTTCCCTGGAAAACGGCGTCAGGGAAGAAACCCTGTCGACAAAGAGCATAGACGCCATAAACGGTTGTTAAGGAACAGGGTTTCTGCTCAACAAGCTCGCGAAAGGAAAAAGGTTTACGTAAATGACTTGGAATCAAGAGCTGTGGAGTTGGAAGAGAAGAATAACAATTTAGAAGAGCGAATTTCAACGTTGATAAATGAAAACACCATGCTACGAAAGGTTCTCATGAACACCAGGGCCAAAGTTGACCACAATGAAGCATAG 534 0.4232 MSLPTLVDTKENTTNTTFPKLKIKDGGTPSSSRAPSSSHNSFPPTEDSDEDVFTVPDVETAGSVDCAGRNGCSSNVNESKLKDPHIHYSAFPGKRRQGRNPVDKEHRRHKRLLRNRVSAQQARERKKVYVNDLESRAVELEEKNNNLEERISTLINENTMLRKVLMNTRAKVDHNEA* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0449 177 MobiDBLite consensus disorder prediction 67 107 - -
Vra4g0449 177 SMART brlzneu 103 167 IPR004827 GO:0003700|GO:0006355
Vra4g0449 177 MobiDBLite consensus disorder prediction 29 43 - -
Vra4g0449 177 CDD bZIP_HY5-like 108 158 - -
Vra4g0449 177 MobiDBLite consensus disorder prediction 1 51 - -
Vra4g0449 177 Pfam bZIP transcription factor 104 163 IPR004827 GO:0003700|GO:0006355
Vra4g0449 177 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 110 125 IPR004827 GO:0003700|GO:0006355
Vra4g0449 177 PANTHER TRANSCRIPTION FACTOR HY5-LIKE 29 175 - -
Vra4g0449 177 SUPERFAMILY Leucine zipper domain 107 166 IPR046347 GO:0003700|GO:0006355
Vra4g0449 177 Gene3D Single helix bin 126 167 - -
Vra4g0449 177 MobiDBLite consensus disorder prediction 1 21 - -
Vra4g0449 177 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 29 175 IPR044280 GO:0000981|GO:0045944
Vra4g0449 177 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 105 168 IPR004827 GO:0003700|GO:0006355
Vra4g0449 177 Coils Coil 123 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0449 Vra-Chr4 7834772 7844629 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0449 60 175 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 62.931 5.37e-39 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra4g0449 bZIP_1 3.8e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0449 K16241 - gmx:100783826 171.014