Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0446 ATGGTTTCAGGGTCAGGGATCTGCGCGAAGAGGGTGGTGGTGGACGCTCGCCACCATATGCTGGGAAGGTTGGCCTCGATCGTGGCCAAGGAACTTCTCAATGGACAGAAGGTGGTGGTGGTGAGGTGCGAGGAGATTTGCATCTCCGGCGGACTCGTGAGGCAGAAGATGAAGTACATGCGCTTTCTCCGCAAGCGCATGAACACCAAACCCTCTCACGGCCCCATTCACTTCCGGGCTCCCGCCAAGATCTTCTGGCGCACCGTTCGCGGGATGATTCCTCATAAGACTAAGCGTGGGGAAGCTGCTCTTGATCGATTGAAGGTTTATGAGGGTATTCCTCCTCCATACGACAAGACTAAGAGGATGGTTGTCCCTGATGCTCTCAAGGTGCTGAGGCTTCAGAAGGGGCACAAATACTGTCTTCTAGGCAAATTGTCATCTGAGGTTGGATGGAACTATTATGATACCATCAGGGAACTGGAAAAGAAGAGGAAGGAGAGGGCACAATTGTCTTATGAGAGGAAGAAGCAGCTTGCTAAATTGAGGGTGAAAGCTGAGAAGGTTGCAGAGGAGAAGCTCGGTTCCCAAATTGAAATCCTTGCTCCCGTTAAGTACTGA 621 0.5169 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGEAALDRLKVYEGIPPPYDKTKRMVVPDALKVLRLQKGHKYCLLGKLSSEVGWNYYDTIRELEKKRKERAQLSYERKKQLAKLRVKAEKVAEEKLGSQIEILAPVKY* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0446 206 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vra4g0446 206 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vra4g0446 206 TIGRFAM L13_A_E: ribosomal protein uL13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Vra4g0446 206 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Vra4g0446 206 PANTHER 60S RIBOSOMAL PROTEIN L13A-4 1 206 - -
Vra4g0446 206 Gene3D Ribosomal protein L13 8 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vra4g0446 206 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vra4g0446 206 PANTHER RIBOSOMAL PROTEIN L13 1 206 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vra4g0446 206 Gene3D - 156 206 - -
Vra4g0446 206 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0446 Vra-Chr4 7800514 7802029 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0446 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 88.835 2.88e-138 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0446 K02872 - gmx:100784830 401.749