Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0442 ATGGAGAACAACGCACTCAGAGATCGAATCTTTGCGGACAATGAACACGAAGAAATCCCTGATTCATTCGTATGCTGCGTTTGTCTGGATCTATTATACAAACCCATTGTGCTATCATGTGGCCACATATGCTGTTTCTGGTGTGTCTATAATTCCATGAATTGTCTGCGCGAGTCTCAATGTCCCGTATGTAGGCATCAATACTATCACTTCCCAACAGTCTGCCAAATGCTTCACTTTTTGCTCCTTAAGATTTATAGTGTTCCTTACAAGAGAAGGGAAGAGCAAACGCTTGAGGAAGAAAAGAAATCAGGATTCTACTCTCCTCAATTTGATCCTGAGACATGTGAATCACAAGCTAAATTTGGTCATTCTGGTATCCCTTCTTCCACCTCTATTATGAATTTGACATCCAACTCATGTAATGGGGGAACTTCTGAATGTATGGAGCAATCAGGGTCCACCACCCATGAAAGAGACGAAGGAACAGGCTATTCTAATGGAGAGCCTGATATTGTTGGAACTCCTGCTAAAAGAAAAAAATTGCCTCAGGAAGATATTTCTCTCCAACAGAAATTATCAGTTGCAGATGTGACGTGTACAATGTGCAAGCAACTTCTCTTTCATCCTGTAGTTCTTAATTGTGGCCATGTATACTGTCAAACTTGCGTCGTCAACACAGATGACGACATGCTCAGATGCCAGATTTGTCAAAGTCCACATCCCAGTAGGTTTCCAAAAGTATGTTTGGAGTTAGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATAGACAGCGGAGAGATGCCATTGAACTACAGCAGATCAAAGTCAAACTTGCGACACCTTCTTGTTCATTGGATAAGGGTAACAAAGGAGAAAATACAGATTGGTGGTCAGATCCTGACTCAAAAGTTCACGTTGGAGTTGGTTGTGATTTTTGTGGGATGTTTCCAATAATTGGAGATAGATATAGATGTGCTGATTGTACGGAGAAGATGGGTTTTGATCTCTGTGGTGATTGCTATGCAACTCGTTCCAAACTCCCCGGTCGATTTAATCAACAACACACCTCAGAGCACAAGTTCAAGCTTGAACAATCCAACATTATTCAAAACATAATGTTGAGGCTGGCCACAGCACAGTTAGGGGACACTTCTATTGACCTGGAGTCTGTAGGAAACTTAGAGATTGCCTCAGACAGCCCCACTATGTTTGATGATGGAGAAGATAACCACAGTGATTCTGAAACCACCAATTGA 1263 0.4157 MENNALRDRIFADNEHEEIPDSFVCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCLRESQCPVCRHQYYHFPTVCQMLHFLLLKIYSVPYKRREEQTLEEEKKSGFYSPQFDPETCESQAKFGHSGIPSSTSIMNLTSNSCNGGTSECMEQSGSTTHERDEGTGYSNGEPDIVGTPAKRKKLPQEDISLQQKLSVADVTCTMCKQLLFHPVVLNCGHVYCQTCVVNTDDDMLRCQICQSPHPSRFPKVCLELDHFLEEQFPEEYRQRRDAIELQQIKVKLATPSCSLDKGNKGENTDWWSDPDSKVHVGVGCDFCGMFPIIGDRYRCADCTEKMGFDLCGDCYATRSKLPGRFNQQHTSEHKFKLEQSNIIQNIMLRLATAQLGDTSIDLESVGNLEIASDSPTMFDDGEDNHSDSETTN* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0442 420 Gene3D - 300 366 IPR043145 -
Vra4g0442 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 12 414 - -
Vra4g0442 420 Pfam Zinc finger, ZZ type 307 347 IPR000433 GO:0008270
Vra4g0442 420 SUPERFAMILY RING/U-box 303 364 - -
Vra4g0442 420 SUPERFAMILY RING/U-box 195 242 - -
Vra4g0442 420 SMART zz_5 306 355 IPR000433 GO:0008270
Vra4g0442 420 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Vra4g0442 420 SUPERFAMILY RING/U-box 10 75 - -
Vra4g0442 420 MobiDBLite consensus disorder prediction 406 420 - -
Vra4g0442 420 CDD RING-HC 25 64 - -
Vra4g0442 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 284 IPR013083 -
Vra4g0442 420 ProSiteProfiles Zinc finger RING-type profile. 200 238 IPR001841 -
Vra4g0442 420 ProSitePatterns Zinc finger RING-type signature. 215 224 IPR017907 -
Vra4g0442 420 ProSiteProfiles Zinc finger ZZ-type profile. 307 371 IPR000433 GO:0008270
Vra4g0442 420 MobiDBLite consensus disorder prediction 144 171 - -
Vra4g0442 420 PANTHER UNCHARACTERIZED 12 414 - -
Vra4g0442 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 112 IPR013083 -
Vra4g0442 420 Pfam RING-type zinc-finger 200 234 IPR027370 -
Vra4g0442 420 SMART ring_2 200 237 IPR001841 -
Vra4g0442 420 SMART ring_2 25 64 IPR001841 -
Vra4g0442 420 MobiDBLite consensus disorder prediction 399 420 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0442 23 67 C3H Transcription Factor Family AT2G42030 40.000 4.75e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0442 - - gmx:100782681 772.696