Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0436 ATGTTACATTATCAATACACAGTTCATGAATACAAACACAAATTACTGGATTTCAACAAGAACACACGAGATCTTCCATTGAATATCAGTATGCCTTTGTCAATCACACTCTTTCTTCTATTGTTAATGTATTTCCAACTTTCATCATCATCTTCTTCATCATCCCTGACAATGGGCTCTTCCCTCTCTGTGGAAAATCCACAGCATATTCTTATCTCACCAAACGCCATCTTTTCTGCTGGCTTTTTAGCCATTGGTGACAACGCATATTCATTTGCAATATGGTTCACGGAGCCTCATTTTCACAGCCCAACTTCCGTCACATGGATGGCAAACCGTGACCAACCTGTCAATGGAAAAAGCTCCAAACTTTCCCTCACAAACGATGGCAACATGGTCTTGATTGATGCTGTTCTTAACACTGCTTGGTCTTCAAACACTGCTTCATCAGCCCCAGTGGAGTTGCATCTCAAAGATGATGGCAATCTAGTGTTACGCCGCCTTCAAGGAACCGTTCTGTGGCAAAGTTTCGATTTTCCAACCGACACTCTCGTTCCTGGTCAGCCTCTTACAAGATATACGCGACTTGTGTCTTCAAGAAGCGAGAGTAACCATTCCTCAGGTTTCTATAAGTTTTTCTTCGATGATGACAACGTTCTTGGTCTTCATTACGATGGTCCTGATGTTTCGAGCTCCTACTGGCCACAACCTTGGTTGATAAGTTGGGATGCTGGAAGGACTAATTTCAACAGTAGTAGAATTGGCGTGTTGAATTCTCTGGGACTTTTTAGTTCAACAGATAATTTCACTTTCGTGACATCTGATTACGGCACAGTGCTGCAGAGAAGGTTGAAAGTGGATTGTGATGGCAATGTTCGAGTGTACAGTCGAAATAATGTTTTGCAGAAGTGGTATGTTTCATGGCAAGCAATTTCTAGTGGTTGCATATCTCATGGGATTTGTGGACCCAACAGCTTCTGCACTTATGTTCATAAGATTGGAAGAAAATGTTTGTGTCTTCCGGGGCATAGATTGAAGAACCACAGTGATTGGTCTCAAGGGTGTGAACCCTTGTTTCAGCTTACTTGCCATAGGAATGAGTCTACGTTCTTGGAGATTCGAAATGTTGAGTTTTATGGCTATGACAATCATTATGTAGAAGTCAGTAACTATAGTGCCTGTGAGAATTTATGCTTGCAAGACTGCAGTTGTAAGGGGTTTCAGCACTCCTACAGTGATGATAAACCCTTTTATAGGTGCTATACGAAAACGCAATTGCTCAATGGAAGACGTTCACCGGTATTCCAAGGAACAACATACCTTAGATTTCCCAAAAGTAATAGCTTCTCTCACAAAGAACATGCCAGTGAACCTTTATATCATCATGTTTGTTCAGTTCAACTTCAAAGAGATTATATCAAATCACAAGCAAACCATTTTGTGAAGATTTTCCTGTGGTTTTCCACCGCCCTTGGAGCTTTTGAAGTGATTTGCATTGTTTTGATTTGGTGTCTAGTTAGGACCAGGCAAAAGTCTAACGTTGAACAAGAGGGCTACCATCTTGCAGGAACAGGATTCAGAAAATATAGTTATTCAGAGTTGAAGAAGGCGACAAAGGGGTTCAGTGAAGAGATCGGAAGGGGGGCGGGAGGGGTTGTGTACAAAGGTATTTTATCAGATGAAAGACATGCAGCAATTAAGAGACTGAATGAAGCTGAACAAGGAGAAGGAGAATTCCTTGCAGAAGTGAGCATCATTGGAAGGCTTAACCACATGAACTTGATTCAAATGTGGGGATATTGTGTTGAGGGAAAGCATAGATTGTTGGTGTATGAATATATGGAGAATGGTTCTTTGGCACAAAATCTCTCATCCAACACTCTTGATTGGAGTAAGAGATACAACATTGCCCTTGGAACTGCAAGAGTTCTTGCATATCTTCATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAGCCACAGAACATACTTCTTGATGCTAATTATCAACCCAAGGTAGCAGATTTTGGCCTGTCCAAGCTACAAAACAGGAACAACTTGAATAAGAGTTCAAGGTTTTCAATGATAAGAGGAACAAGAGGGTACATGGCACCTGAGTGGGTTTATAATTTACCAATCACTTCGAAAGTGGATGTTTACAGCTACGGAATTGTTGTTTTGGAAATGGTAACCGGGAAAAGCACAAGAAGAAGTATTCATGATGATGAAGAAAGATATGATGGGAGGGTGGTGGAATGGGTGAGAGAGAAAAGGAGCAACAGTAGTAACACATCTTGGGTGGAGGAGATAATTGCACCTGATATTGCAGCTGATTATGATCATAGGAAGATGGAAATTCTGTGTACAGTGGCTTTGAACTGTGTGATGGAAGAAAGAGATTCAAGGCCCAGCATGAGCCAAGTAGTTGAGATGCTTCAGTGA 2448 0.4122 MLHYQYTVHEYKHKLLDFNKNTRDLPLNISMPLSITLFLLLLMYFQLSSSSSSSSLTMGSSLSVENPQHILISPNAIFSAGFLAIGDNAYSFAIWFTEPHFHSPTSVTWMANRDQPVNGKSSKLSLTNDGNMVLIDAVLNTAWSSNTASSAPVELHLKDDGNLVLRRLQGTVLWQSFDFPTDTLVPGQPLTRYTRLVSSRSESNHSSGFYKFFFDDDNVLGLHYDGPDVSSSYWPQPWLISWDAGRTNFNSSRIGVLNSLGLFSSTDNFTFVTSDYGTVLQRRLKVDCDGNVRVYSRNNVLQKWYVSWQAISSGCISHGICGPNSFCTYVHKIGRKCLCLPGHRLKNHSDWSQGCEPLFQLTCHRNESTFLEIRNVEFYGYDNHYVEVSNYSACENLCLQDCSCKGFQHSYSDDKPFYRCYTKTQLLNGRRSPVFQGTTYLRFPKSNSFSHKEHASEPLYHHVCSVQLQRDYIKSQANHFVKIFLWFSTALGAFEVICIVLIWCLVRTRQKSNVEQEGYHLAGTGFRKYSYSELKKATKGFSEEIGRGAGGVVYKGILSDERHAAIKRLNEAEQGEGEFLAEVSIIGRLNHMNLIQMWGYCVEGKHRLLVYEYMENGSLAQNLSSNTLDWSKRYNIALGTARVLAYLHEECLEWILHCDIKPQNILLDANYQPKVADFGLSKLQNRNNLNKSSRFSMIRGTRGYMAPEWVYNLPITSKVDVYSYGIVVLEMVTGKSTRRSIHDDEERYDGRVVEWVREKRSNSSNTSWVEEIIAPDIAADYDHRKMEILCTVALNCVMEERDSRPSMSQVVEMLQ* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0436 815 Gene3D - 48 178 IPR036426 -
Vra4g0436 815 Gene3D Transferase(Phosphotransferase) domain 1 614 815 - -
Vra4g0436 815 ProSiteProfiles Bulb-type lectin domain profile. 47 178 IPR001480 -
Vra4g0436 815 ProSiteProfiles PAN/Apple domain profile. 363 447 IPR003609 -
Vra4g0436 815 Pfam PAN-like domain 363 425 IPR003609 -
Vra4g0436 815 PIRSF SRK 26 815 IPR024171 GO:0004674
Vra4g0436 815 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 31 815 - -
Vra4g0436 815 SUPERFAMILY Protein kinase-like (PK-like) 519 814 IPR011009 -
Vra4g0436 815 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 31 815 - -
Vra4g0436 815 CDD STKc_IRAK 545 815 - -
Vra4g0436 815 Gene3D Hepatocyte Growth Factor 369 452 - -
Vra4g0436 815 Pfam Protein kinase domain 542 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0436 815 ProSitePatterns Protein kinases ATP-binding region signature. 545 567 IPR017441 GO:0005524
Vra4g0436 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
Vra4g0436 815 SMART blect_4 61 180 IPR001480 -
Vra4g0436 815 Pfam D-mannose binding lectin 107 192 IPR001480 -
Vra4g0436 815 Pfam S-locus glycoprotein domain 268 346 IPR000858 GO:0048544
Vra4g0436 815 SMART serkin_6 539 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0436 815 CDD PAN_AP_plant 359 444 - -
Vra4g0436 815 Gene3D Phosphorylase Kinase; domain 1 504 613 - -
Vra4g0436 815 CDD B_lectin 71 180 IPR001480 -
Vra4g0436 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 107 197 IPR036426 -
Vra4g0436 815 ProSiteProfiles Protein kinase domain profile. 539 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0436 Vra-Chr4 7528428 7531648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0436 529 814 Trihelix Transcription Factor Family AT5G38560 41.156 6.14e-63 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra4g0436 Pkinase 1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0436 - - gmx:100783758 1234.17