Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0435 ATGGCTTTGTTAATCACACTCCTTCTATCATTAATGTATTTCCAGCGTACATCGTCTTCTTCATCATCCTTGAGAATGGGTTCTTCCCTCTCTGTGGAAAATCCACAGCATATTCTCATCTCACCAAACGCCATCTTTTCTGCAGGATTTATAGCCATTGGTGAGAACGCATATTCATTTGCAATATGGTTCACGGAACCTCATTTTCACAGCCCCAACACTGTCACATGGATGGCAAACCGTGACCAACCTGTCAATGGAAAACGCTCCAAACTTTCCCTCACAAATGATGGCAACGTTGTCTTAGTCGATGCTTCTTTTAACACTGCTTGGTCTTCAAACACCGATTCGTTAGACCCAGTAGAGTTGCATCTCAGAGACGACGGTAATCTAGTGTTACGCCAGCTACAAGGAACCATTCTGTGGCAAAGTTTCGATTTTCCAACGGACACTCTCGTTCCTGGTCAGCCTCTTACCAGATACACACATCTTTTGTCATCAAGAAGCCACACTAACCATTCATCTGGTTTCTACAAGCTGTATTTCGGCGATGATAACATTCTTCGTCTTCTATATGATGGCCCTGATGTTTCAAGCTCCTACTGGCCAAGTCCTTATCGTGTAAGTTGGGATGTTGGTAGAACTTTATTCAATAGCAGTAGAATTGCTGTGTTGAATTCTTTTGGGAGAAGGTTGAAACTGGACCCTGATGGTAATTTCCGAGTGTATAGTCGAAATAGTGTGTTAGAGAAGTGGTATGTTTCGTGGCAAGCAATTACTAATGGTTGCCAGGTTCATGGGGTTTGTGGAGCCAACAGCACGTGTGCTTTTGATCATGAGAGGGGGAAAAAGTGTGAGTGTCTTCCAGGGTACAGATGGAACAACCTCAGTGATTGGTCTCATGGGTGTAAGCCCATGTTTGATCTCATCTGCAATCAGAATGAGTCTACATTCTTGGAGATGCAGGGTGTGGAATTTTACGGGTATGATTTTTATTATGTAGAAGTTAGTAATTTTACTGCTTGTGAGAAACTGTGCTTGCAAAATTGTAGTTGTGTAGGGTTTCAGCACTCCTATACTGACAAAAAGGGCATAGCCTTCAAGTGTTATACCAAAACACAATTGCTCAATGGAAGGCGTTTACCCAGATTCACAGGAACAACATACTTGAGAGTGACCAAAGGTTATAGCTTCTCTGTGAAAGAATCTTCTAATGACACTTCTCATGTTCTTCGAGTTTGTTCAGTTCAACTTCAAAGAGATTATGCAAAATCACAAGGAAGCCGTATTGTGATTGTTTTTCTGTGGTTTGCTTCCGCACTTGGAGGTTTTGAAATGGTTTGTGCTTTCGTGATTTGGTGCTTCCTAATTAGAACCAACCGAAAGTCTAAAGCAGATCAAAAGGGGTACCATCTTACAGCAACGGGATTCAGAAAATTTAGCTACTCCGAGCTGAAAAAGGCTACAAAGGGGTTCAGTAAAGAGATTGGAAGAGGTGGGGGAGGGGTTGTGTACGAAGGTATTTTATCAGATGAAAGACATGCAGCAATTAAGAGACTGAATGAAGCTAAACAAGGAGAAGGAGAATTCCTTGCTGAAGTGAGCATCATTGGAAAGCTTAACCACATGAACTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAGCATAGATTGTTGGTGTATGAGTATATGGAGAATGGTTCTTTGGCAGAAAGTCTCTCAACTAACAAACTTGATTGGAGTAAGAGATACAACATTGCAATTGGAACTGCAAGAGTTCTGGCATATCTGCATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAGCCACAAAATATACTTCTAGATTCCAATTATGAGCCAAAGTTAGCAGACTTTGGCTTGTCTAAGCTCCTCAACAGAAACAACCCCAACAATCCAAGCATCTCTATGATCAGAGGAACGAGAGGGTATATGGCACCTGAGTGGGTTCTTAACTTGCCAATCACATCCAAGGTGGATGTTTATAGCTATGGAATTGTTGTTTTGGAACTGGTAACTGGAAAAAGCACAACAAGTGTCCAAGAAATTGATGGTGGAGAGACATATGATGGGAGGCTAGTGGCATGGGTGAGAGAAAAAAGAAGCAACACCAACTCAGATTGGGTGGAACAAATAGTTGAACCTGCTATTGGACCTGATTATGATAGAAGTAAGATGGAAATGTTGACAACAGTGGCTTTGAACTGTGTGATGGAAGACAGAGATTCAAGGCCTACCATGAGCCAAGTAGTTGAGATGCTTCAAGGTCATGGAAGTGAATCTGATTCATGA 2322 0.4177 MALLITLLLSLMYFQRTSSSSSSLRMGSSLSVENPQHILISPNAIFSAGFIAIGENAYSFAIWFTEPHFHSPNTVTWMANRDQPVNGKRSKLSLTNDGNVVLVDASFNTAWSSNTDSLDPVELHLRDDGNLVLRQLQGTILWQSFDFPTDTLVPGQPLTRYTHLLSSRSHTNHSSGFYKLYFGDDNILRLLYDGPDVSSSYWPSPYRVSWDVGRTLFNSSRIAVLNSFGRRLKLDPDGNFRVYSRNSVLEKWYVSWQAITNGCQVHGVCGANSTCAFDHERGKKCECLPGYRWNNLSDWSHGCKPMFDLICNQNESTFLEMQGVEFYGYDFYYVEVSNFTACEKLCLQNCSCVGFQHSYTDKKGIAFKCYTKTQLLNGRRLPRFTGTTYLRVTKGYSFSVKESSNDTSHVLRVCSVQLQRDYAKSQGSRIVIVFLWFASALGGFEMVCAFVIWCFLIRTNRKSKADQKGYHLTATGFRKFSYSELKKATKGFSKEIGRGGGGVVYEGILSDERHAAIKRLNEAKQGEGEFLAEVSIIGKLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAESLSTNKLDWSKRYNIAIGTARVLAYLHEECLEWILHCDIKPQNILLDSNYEPKLADFGLSKLLNRNNPNNPSISMIRGTRGYMAPEWVLNLPITSKVDVYSYGIVVLELVTGKSTTSVQEIDGGETYDGRLVAWVREKRSNTNSDWVEQIVEPAIGPDYDRSKMEMLTTVALNCVMEDRDSRPTMSQVVEMLQGHGSESDS* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0435 773 PIRSF SRK 1 773 IPR024171 GO:0004674
Vra4g0435 773 ProSiteProfiles Protein kinase domain profile. 490 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0435 773 SMART blect_4 29 148 IPR001480 -
Vra4g0435 773 Gene3D Hepatocyte Growth Factor 319 402 - -
Vra4g0435 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 606 618 IPR008271 GO:0004672|GO:0006468
Vra4g0435 773 Pfam S-locus glycoprotein domain 228 292 IPR000858 GO:0048544
Vra4g0435 773 ProSiteProfiles PAN/Apple domain profile. 311 394 IPR003609 -
Vra4g0435 773 Gene3D Transferase(Phosphotransferase) domain 1 565 772 - -
Vra4g0435 773 SUPERFAMILY Protein kinase-like (PK-like) 469 764 IPR011009 -
Vra4g0435 773 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 5 770 - -
Vra4g0435 773 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 191 IPR036426 -
Vra4g0435 773 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 5 770 - -
Vra4g0435 773 Pfam D-mannose binding lectin 74 160 IPR001480 -
Vra4g0435 773 Gene3D - 16 146 IPR036426 -
Vra4g0435 773 ProSiteProfiles Bulb-type lectin domain profile. 15 146 IPR001480 -
Vra4g0435 773 SMART serkin_6 490 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0435 773 Pfam Protein kinase domain 493 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0435 773 Gene3D Phosphorylase Kinase; domain 1 455 564 - -
Vra4g0435 773 CDD B_lectin 39 148 IPR001480 -
Vra4g0435 773 Pfam PAN-like domain 311 374 IPR003609 -
Vra4g0435 773 CDD STKc_IRAK 496 766 - -
Vra4g0435 773 ProSitePatterns Protein kinases ATP-binding region signature. 496 518 IPR017441 GO:0005524
Vra4g0435 773 CDD PAN_AP_plant 307 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0435 Vra-Chr4 7501513 7503894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0435 418 764 Receptor kinase-like Gene Family AT3G58690 35.676 9.17e-66 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra4g0435 Pkinase 5.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0435 - - var:108322780 1493.79