Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0430 ATGAGTTGCTTTTCATGTTTTTCATCAACTAAAGCAGCCAAACCTTGTAACAATGGAAAGAGGATGCAACAGCCTGCTTCTCATTCTCCCAAAGAATCGGCTCAGTCACAACCAGAGAATTACAATAACAAGGCAAAGACAAACCATCATCAATCAGAACCTAAAATGGACAAGGAGGTCAATAAAGATAATGAGAACAACAACATTGCTGCTCAAACTTTCACCTTCAGGGAATTGGCTAATATCACAAAGAACTTCAGGCAAGAATGCCTAATAGGAGAAGGTGGTTTTGGGAGGGTTTACAAAGGAAAACTTGAAAAAACCAACAAGGAAGTAGCTGTGAAGCAACTTGACAGAAATGGATTACAAGGGAACAGAGAATTTCTTGTTGAGGTTTTAATGTTGAGTCTTTTGCACCATAGAAATCTAGTGAATCTAATTGGATATTGTGCTGATGGAGATCAAAGATTATTGGTCTATGAGTACATGCCATTGGGATCCCTTGAGGACCATCTTCTTGATCTTGAACCACGACAAAAGCCTCTAGAATGGTTCCATAGAATGAAAATAGCTTTGGATGCTGCAAAAGGTCTAGAATATTTGCATGACAAAGCCAACCCTCCAGTGATCTACCGTGACTTGAAATCATCAAACATCTTATTAGACAGAGAATTCAATGCAAAACTCTCTGATTTTGGACTTGCAAAGTTGGGTCCTACGGGAGACAAATCTCATGTATCATCAAGAGTAATGGGTACTTACGGATACTGTGCTCCTGAGTATCAAAGAACTGGTCAACTAACTGTACAATCAGATGTATACAGCTTTGGAGTTGTTTTGCTTGAACTAATCACCGGAAGGAGAGCCATTGATAACACAAGAAAACCACATGAGCAAAATCTGGTTAATTGGGCAGAACCAATATTCAAGGAGCCAAACAGATACTCAGAATTGGCAGACCCAGTTCTTGAAGGAAAGTTTCCAGTGAGATCGTTGAATCAAGCAGTGGCAATAGCAGCCATGTGTTTGAACGAGGAGCCATCAGTGAGACCTTTGATCAGTGATGTTGTGACTGCCCTTAGTTTTCTTGGGACAATCTCAAAGGGTGAAGAACTCCAAGGAACATCTCCTCCTGTTGACATGCCCTCCCCATCACACCACCCACAACAACCCACCAATGCTTCTTCCGATCTTCTTGATCAAGATATCGCTGCCATGGAACGCCAAAGAGCAGTTGCTGAAGCCATCGAATGGGGCAACAATTCTAGGAACAAAGCACCGCATCGTCAAACTCCTCCATCTTTGTAA 1308 0.4159 MSCFSCFSSTKAAKPCNNGKRMQQPASHSPKESAQSQPENYNNKAKTNHHQSEPKMDKEVNKDNENNNIAAQTFTFRELANITKNFRQECLIGEGGFGRVYKGKLEKTNKEVAVKQLDRNGLQGNREFLVEVLMLSLLHHRNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLEPRQKPLEWFHRMKIALDAAKGLEYLHDKANPPVIYRDLKSSNILLDREFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVQSDVYSFGVVLLELITGRRAIDNTRKPHEQNLVNWAEPIFKEPNRYSELADPVLEGKFPVRSLNQAVAIAAMCLNEEPSVRPLISDVVTALSFLGTISKGEELQGTSPPVDMPSPSHHPQQPTNASSDLLDQDIAAMERQRAVAEAIEWGNNSRNKAPHRQTPPSL* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0430 435 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL26-RELATED 23 427 - -
Vra4g0430 435 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0430 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Vra4g0430 435 MobiDBLite consensus disorder prediction 369 435 - -
Vra4g0430 435 SUPERFAMILY Protein kinase-like (PK-like) 72 388 IPR011009 -
Vra4g0430 435 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Vra4g0430 435 Gene3D Transferase(Phosphotransferase) domain 1 163 372 - -
Vra4g0430 435 MobiDBLite consensus disorder prediction 1 45 - -
Vra4g0430 435 MobiDBLite consensus disorder prediction 1 63 - -
Vra4g0430 435 MobiDBLite consensus disorder prediction 46 63 - -
Vra4g0430 435 CDD STKc_IRAK 92 360 - -
Vra4g0430 435 Gene3D Phosphorylase Kinase; domain 1 55 162 - -
Vra4g0430 435 PANTHER OS07G0668900 PROTEIN 23 427 - -
Vra4g0430 435 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0430 435 Pfam Protein kinase domain 88 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0430 Vra-Chr4 7277263 7279429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0430 1 423 Glycoside Hydrolase AT3G07070 67.453 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vra4g0430 Pkinase 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0430 - - gmx:100786405 671.774