Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0427 ATGTACCATCATCCCCAACACCAAGGGAAAAACATTCATTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCACATGTTCCTTCAAACAGGAAATGGTTCTGGCGATTCTGGACTTGTGCTTTCAACTGATGCTAAGCCAAGATTAAAATGGACAGCAGATCTTCATGCCAGATTTATAGAAGCAGTCAATCAGTTAGGTGGAGCTGACAAAGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGACTTACCTTATATCATTTGAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGCAACAACGTGACACACAAAATGACAACAAGTGCAGCAACTGGGGAGAGACTTTCTGAAACCAGTGGAACTCACATGAACAAATTAAGCCTTGGACCGCAGGCTAACAAAGATTTGCATATAAGCGAGGCACTGCAGATGCAGATTGAGGTGCAGAGAAGGCTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTTAGGATTGAGGCCCAAGGAAAATACCTTCAGTCTGTGTTGGAGAAAGCTCAGGAGACTCTTGGCAGACAAAATTTGGGAATAGTTGGACTTGAAACTGCCAAAGTTCAACTGTCAGAGCTGGTGTCAAAAGTCTCATCTCAGTGCCTTAACTCAGCATTCTCAGAGCTGAAGGAATTGCAAGGATTTTGCCCTCAGCAAACACACACCAACCAGCCAAACGATTGCTCAGTGGACAGTTGCCTCACATCCTGTGACAGATCACAGAAGGAGCAAGAGATTCAAAATGGCTTTAGACACTTCAACAGCCATATGTTCATGGAACAAAAGGAAGCCACAGAAGCTCCCAACAACCTTAGGAACTGTGAACTCAAGTGGTGTGATGATGGGAAAAAGAACACCTTCCTTGCCCCATTGAGCAGGAATGAAGAAAGAAGAAACTATGCCGCTGAAACCGGTCCTGGCAACTTATCCATGTCCATTGGACTTGAAAGAGAAACAGAAAACAGAAGCAGCATGTATCCTGAAAGGCTAATCACAGAAAACCAAACAGAAGTTGAGTTCCAGCACCGGAACAGAATCAAGACAGAAACAATGAAACCAGTGGATGAAAAAGTTTCTCAAGATTATAGGATGCCAGCTTCTTACTTTGTAGCACCAAGATTGGACCTAAACAACCATGGAGACAATGAAGCTGCAACCACTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAGCTGA 1263 0.4347 MYHHPQHQGKNIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTADLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKMTTSAATGERLSETSGTHMNKLSLGPQANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLETAKVQLSELVSKVSSQCLNSAFSELKELQGFCPQQTHTNQPNDCSVDSCLTSCDRSQKEQEIQNGFRHFNSHMFMEQKEATEAPNNLRNCELKWCDDGKKNTFLAPLSRNEERRNYAAETGPGNLSMSIGLERETENRSSMYPERLITENQTEVEFQHRNRIKTETMKPVDEKVSQDYRMPASYFVAPRLDLNNHGDNEAATTCKQLDLNRFSWS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0427 420 MobiDBLite consensus disorder prediction 116 138 - -
Vra4g0427 420 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Vra4g0427 420 Pfam MYB-CC type transfactor, LHEQLE motif 147 193 IPR025756 -
Vra4g0427 420 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 420 IPR044848 GO:0003700
Vra4g0427 420 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Vra4g0427 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Vra4g0427 420 Coils Coil 149 169 - -
Vra4g0427 420 Gene3D - 45 103 - -
Vra4g0427 420 MobiDBLite consensus disorder prediction 116 140 - -
Vra4g0427 420 PANTHER MYB-RELATED PROTEIN 2 4 420 - -
Vra4g0427 420 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0427 Vra-Chr4 7212560 7215022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0427 78 420 G2-like Transcription Factor Family AT3G04030 49.568 1.10e-96 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra4g0427 Myb_DNA-binding 1.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0427 - - pvu:PHAVU_005G123900g 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0427 4 7212560 7215022 Vra2g0853 2 8009666 8012152 PCT