Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0425 ATGGCGAGCCACAGAATAGGAGAACTCGGTTTGTCTGAGTCGGGACCTTCAAGCCACCACATCCCTTATGGAGTGCTTCATGGAATAAACACTACTCCAGTATCAAACTTAATCAATCAAGGATCTGCTTTTGATTTTGGGGAGCTGGAGGAAGCAATTGTTCTGCATGGAGTCAAGAGTAGAAATGATGATGACAAAGCATCTTTATTCACAGCCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAACAAACCCCAAGAGGTGGATCAAAGTCAGGAGGGGAAAGCACTGATTCAGGTCTTTCCAGCAAAACTGAGCCCCCCTTCGAGGCAGAATCTCCCATGAGTAAAAAGGCATCTTCTTCAGATCACCAGGCTTTTGATCAGCAGCATCTGCAGCACAGACAGCAGCTTCAACAGGATATGGCAAGTGATGCCGCAAGAACAGCCTCTTCACAGAATCAATCAGCAGCCAAATCACAACAAGAAAAGAGAAAGGGAGCTGGTTCAACATCAGAGAAACCACTTGATGCAAAGACACTAAGACGTTTAGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAGCTAGAATCAAGTAGATTAAAGCTTACCCAGATAGAACAAGAACTCCAAAGAGCACGCTCTCAGGGCTTGTTCGTGGATTGTGGTGGTGTTGGAAGCAATGTAAGCTCTGCGGGAGCCGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGAAGACCACAGGCTAATGGGGGAGCTTCGGAACGGGTTGCAAGTACCCTTATCAGATAGTGATATGAGAGTGATGGTGGATGGATATCTCTCCCACTATGATGAGATTTTCAGGCTCAAGGGTGTGGCTGCTAAATCAGATGTGTTCCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGTTGCTTCCTCTGGATTGGTGGTTTTAGACCCTCTGATCTCATCACGATGCTGATACAACAATTGGAGCCACTAGCTGAGCAACAGATAATGGGGATGTATGGCCTGAGACATTCCTCACAGCAAGCAGAAGAAGCACTCTCTCAGGGCCTTGAACAGTTGCAGCAATCTCTTGTGGACACCATTGCTGGAGGCCCAGTTGTTGATGGTGTGCAACAAATGGTCGTTGCCATGAGCAAACTAGCCAATCTTGAAGGATTTGTTCGTCAGGCTGATAATTTGAGGCAACAAACTCTTCATCAGTTATGTCGATTACTCACAGTTCGTCAAGCAGCACGATGCTTCATTGTCATTGGAGAATACTATGGACGTCTTCGAGCCCTTAGTTCTCTCTGGGCATCAAGACCACGAGAGACCTTGATCGGTGATGATAACTCATGCCAAACAACAACAGAAATGCAAGTGGTCCAACATTCTCAGAATCATTTCTCGACTTTCTGA 1467 0.4628 MASHRIGELGLSESGPSSHHIPYGVLHGINTTPVSNLINQGSAFDFGELEEAIVLHGVKSRNDDDKASLFTARPAATLEMFPSWPMRFQQTPRGGSKSGGESTDSGLSSKTEPPFEAESPMSKKASSSDHQAFDQQHLQHRQQLQQDMASDAARTASSQNQSAAKSQQEKRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQIEQELQRARSQGLFVDCGGVGSNVSSAGAAMFDMEYGRWLEEDHRLMGELRNGLQVPLSDSDMRVMVDGYLSHYDEIFRLKGVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLEQLQQSLVDTIAGGPVVDGVQQMVVAMSKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLIGDDNSCQTTTEMQVVQHSQNHFSTF* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0425 488 PANTHER TRANSCRIPTION FACTOR TGA9 65 467 - -
Vra4g0425 488 Pfam bZIP transcription factor 184 220 IPR004827 GO:0003700|GO:0006355
Vra4g0425 488 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 227 IPR004827 GO:0003700|GO:0006355
Vra4g0425 488 SMART brlzneu 181 246 IPR004827 GO:0003700|GO:0006355
Vra4g0425 488 MobiDBLite consensus disorder prediction 81 187 - -
Vra4g0425 488 SUPERFAMILY Leucine zipper domain 185 228 IPR046347 GO:0003700|GO:0006355
Vra4g0425 488 ProSiteProfiles DOG1 domain profile. 249 457 IPR025422 GO:0006351|GO:0043565
Vra4g0425 488 Pfam Seed dormancy control 267 341 IPR025422 GO:0006351|GO:0043565
Vra4g0425 488 Gene3D - 184 233 - -
Vra4g0425 488 PANTHER TRANSCRIPTION FACTOR TGA9 65 467 - -
Vra4g0425 488 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 188 203 IPR004827 GO:0003700|GO:0006355
Vra4g0425 488 MobiDBLite consensus disorder prediction 89 112 - -
Vra4g0425 488 MobiDBLite consensus disorder prediction 121 171 - -
Vra4g0425 488 MobiDBLite consensus disorder prediction 172 187 - -
Vra4g0425 488 CDD bZIP_HBP1b-like 185 235 - -
Vra4g0425 488 Coils Coil 204 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0425 Vra-Chr4 7182698 7189623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0425 127 488 bZIP Transcription Factor Family AT1G08320 67.486 1.09e-179 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra4g0425 DOG1 5.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0425 K14431 - gmx:100775461 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0425 4 7182698 7189623 Vra4g0425 4 7182698 7189623 ECH
Vra4g0425 4 7182698 7189623 Vra2g0851 2 7950275 7957099 PCT