Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0424 ATGATACCAATGGCAGTTAAAACCATTTCTTCCCTTCTCTTTAATCTCTTCCTCTCTTTCACCTTCCTCTTCTTCCTTCTATATATTTACACCCCACATCCTTCTCTATTCTCACAATTCAGTCTCTCCCTTCTCTTTGTATTCAGGCTAGAACTGTTTCTTATAGCCCTTTCATATGCACTCATGAATTTCGAACAATCAGAGCAAGAGGTGCCGCTTCAAGACATTGAAGTTGCATTCTATCAACTGAGTCATCAGAACTCAGAAGTCTCACTCCCCGTTGACGAGGAGGTCAGTGACAAGAACGGAAAGAGCGTAGGGTCCATAACCATGGATGAATTCATAGCCAGCATTTGGAACACAGATGAGTTCCAACTTAACCCTCCTCTACCCGTCTACGAGGAAGCTGAAAAGAACAACAACGTTGCACCAGAACCCACCATTCCTCAGCCAGGCTCATTCCCTGTCCCTCCCCCAATTTGCAACAAAACTACGGATGAAGTTTGGTCTCAGATCCAGAAAAGCCAACCACAACAAAATGAAGCTGAAGCTGAAGCTGATGCTGATGACAGCCTTGCTAGTGATGAAACAATCCAAAAGGAACCCACATTTGGAGAAATGACTTTGGAGGATTTCCTAATAAAAGCTGGGGTTGTCACTGAATCAACACTGTTCACCACTATATTACCTCAGAATCATTTCGCTAACATTCCAACCAATATTCCATTTAATGCAAGCTATATATTAATTGGAACTACTGGACCTAATATCCCCTGTGCTAGATTTGAACCACATCAAATGCTGCCACCGAATAACCACTTTGTTGTGAGGAATTTCACTGCTACAAATGTTGCTGTGGAGAATAATGCTCGAAACGTAGCAGAATCAAGTGGCAACAATGGCAAGGGTAAGAAAAGGATCATTAATGGTCCTCCCGAAGTGGTAATAGAGAGAAGGCAGCGCAGAATGCTGAAGAATCGAGAATCAGCAGCACGATCTCGTGCAAGAAGACAGGCATATACTGTGGAGCTTGAAGCAGAGCTGAATAATCTGAAAAATGAGAACGAAGAGCTTAAGAATATGCTGGCTGAAGATGAACGCAAGAGACTACAAGTAGTAAGTGATTATGTCTCAAATTTAATTCAGAGACAGGCCCCAACAACGGTTCAAATGAGGAATGAGAAAAAGAGGAAATTGAAGAGGCCTCTGAGTGCATCCTGGTGA 1224 0.4273 MIPMAVKTISSLLFNLFLSFTFLFFLLYIYTPHPSLFSQFSLSLLFVFRLELFLIALSYALMNFEQSEQEVPLQDIEVAFYQLSHQNSEVSLPVDEEVSDKNGKSVGSITMDEFIASIWNTDEFQLNPPLPVYEEAEKNNNVAPEPTIPQPGSFPVPPPICNKTTDEVWSQIQKSQPQQNEAEAEADADDSLASDETIQKEPTFGEMTLEDFLIKAGVVTESTLFTTILPQNHFANIPTNIPFNASYILIGTTGPNIPCARFEPHQMLPPNNHFVVRNFTATNVAVENNARNVAESSGNNGKGKKRIINGPPEVVIERRQRRMLKNRESAARSRARRQAYTVELEAELNNLKNENEELKNMLAEDERKRLQVVSDYVSNLIQRQAPTTVQMRNEKKRKLKRPLSASW* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0424 407 SMART brlzneu 314 378 IPR004827 GO:0003700|GO:0006355
Vra4g0424 407 Coils Coil 337 373 - -
Vra4g0424 407 PANTHER BZIP TRANSCRIPTION FACTOR 64 407 - -
Vra4g0424 407 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 316 368 IPR004827 GO:0003700|GO:0006355
Vra4g0424 407 MobiDBLite consensus disorder prediction 171 194 - -
Vra4g0424 407 MobiDBLite consensus disorder prediction 387 407 - -
Vra4g0424 407 Gene3D - 316 371 - -
Vra4g0424 407 SUPERFAMILY Leucine zipper domain 318 368 IPR046347 GO:0003700|GO:0006355
Vra4g0424 407 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 321 336 IPR004827 GO:0003700|GO:0006355
Vra4g0424 407 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 64 407 IPR043452 GO:0003700|GO:0045893
Vra4g0424 407 Pfam bZIP transcription factor 318 363 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0424 Vra-Chr4 7175101 7177404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0424 83 407 bZIP Transcription Factor Family AT3G44460 38.298 1.78e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra4g0424 bZIP_1 3.1e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0424 K14432 - gmx:100799576 300.441