Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0420 ATGAGTTTTAGAGAGTGCAATGTAGAAAACCAGAATCTGTGTCTTCAAACCCCAACTTTCATCGAGTGGCTCAAACCATCTTCTTCTGTAATAAGTTCAATATCATCTCCACCTTCTTCCTTGGCTCGGCATGATCAACTTTCTCAAGAAACGATCCAGTTTTTGCCCTTCGAGGAAGACCATGAAAAGGATGGCTTAGAAGTGAAAGAAGAGAAGCTGGAACAGGTGACTGTGGCTTTGCACATTGGATTGCCTCACACAGTAGACCCTGAAACTGATAATCATGAAAAGAAGATTATCCATGTAAAGGAAGAAGAACCCTTGAAGAAAAGCTTCCAGGGTTGTTCTTTTAACCAGGAGAGAAGATTTTGGATACCAACTCCTGCACAGATTCTTGTCGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCACGGATCCGAATTTAGAAAAGGACCAGATTCACTTAGAGGAACACAACCAGCAGCAATGCTAAGGCTGCCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCCAAGCCCTTGAAGGACTTCAGAACTCTCCAAACCCACTACAAAAGAAAGCATGGTGCAAAACCATTTATGTGCCGAAAGTGTTCAAAATCCTTTGCAGTTAAAGGAGACTGGAGAACTCACGAAAAGAACTGCGGAAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGATCCCTAAAAGACCATATTAGATCCTTTGGAAAAGGCCACTCCCCACATCCTTCTCATGAGAAAGAATGCGTTACTGGATCTGATGAAGATGAAGTTCCTCATACATGA 888 0.4257 MSFRECNVENQNLCLQTPTFIEWLKPSSSVISSISSPPSSLARHDQLSQETIQFLPFEEDHEKDGLEVKEEKLEQVTVALHIGLPHTVDPETDNHEKKIIHVKEEEPLKKSFQGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSHEKECVTGSDEDEVPHT* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0420 295 Pfam Zinc finger, C2H2 type 138 157 IPR013087 -
Vra4g0420 295 MobiDBLite consensus disorder prediction 267 295 - -
Vra4g0420 295 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Vra4g0420 295 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 45 292 - -
Vra4g0420 295 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 43 - -
Vra4g0420 295 SUPERFAMILY beta-beta-alpha zinc fingers 208 242 IPR036236 -
Vra4g0420 295 PANTHER ZINC FINGER PROTEIN WIP2 45 292 IPR043584 GO:0003700|GO:0010468
Vra4g0420 295 PANTHER ZINC FINGER PROTEIN WIP2 1 43 IPR043584 GO:0003700|GO:0010468
Vra4g0420 295 Gene3D Classic Zinc Finger 137 160 - -
Vra4g0420 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Vra4g0420 295 SMART c2h2final6 185 217 IPR013087 -
Vra4g0420 295 SMART c2h2final6 222 242 IPR013087 -
Vra4g0420 295 SMART c2h2final6 138 160 IPR013087 -
Vra4g0420 295 Gene3D Classic Zinc Finger 181 271 - -
Vra4g0420 295 SUPERFAMILY beta-beta-alpha zinc fingers 107 161 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0420 Vra-Chr4 7122597 7125506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0420 7 285 C2H2 Transcription Factor Family AT1G08290 56.886 3.04e-118 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra4g0420 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0420 - - gmx:100819306 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0420 4 7122597 7125506 Vra4g0420 4 7122597 7125506 ECH
Vra4g0420 4 7122597 7125506 Vra2g0848 2 7900737 7904187 PCT