Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0405 ATGATCAACAATGATGACTACTCTTTCTCTTCATCACCATCATCCACTTCTTCTCCATCGGATAATTCATCATTCCGTTCTCACAAGAGGAAAGCTGGGAGAAGAAAGTTTAGAGAAACACGGCATCCAGTGTATAGAGGAGTTCGTCAGAGAAACGGTGACAGATGGGTATGTGAAGTTCGTGAACCCAACACCAAATCAAGGATATGGCTCGGAACATACTCTGCACCAGAAATGGCAGCTAGGGCACATGACGTGGCTGCCCTAGCACTTAAGGGCACCTCTGCAGCATTCAATTTCCCTGATTCGGTTTCTCTTCTTCCAGTTGCAAAGTCATCTTCAGCTGCAGATATTAGAGCGGCTGCAGCACAAGTTTCCGAGCTTTTTTTACCGACCAACCCTTCTTCTTCGTCCTTTACAAGGGTTGAAATTGAAACTAACCCTTGTTCGGTGGAGGGTGTTGTTGATTTTGCCAAGGAGTCCAAGGAATCAGTGTTTTTTGACGAAGAGGCGATTTATAACATGCCAGGTTTGTTAGATAGCATGGCAGAGGGTCTTCTCATTACTCCACCTTCTATGAAGAGATTTGATTGGGACGAGGTTGATTGTGAAACAGACCTCACTCTCTGGACATATTAA 639 0.4476 MINNDDYSFSSSPSSTSSPSDNSSFRSHKRKAGRRKFRETRHPVYRGVRQRNGDRWVCEVREPNTKSRIWLGTYSAPEMAARAHDVAALALKGTSAAFNFPDSVSLLPVAKSSSAADIRAAAAQVSELFLPTNPSSSSFTRVEIETNPCSVEGVVDFAKESKESVFFDEEAIYNMPGLLDSMAEGLLITPPSMKRFDWDEVDCETDLTLWTY* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0405 212 MobiDBLite consensus disorder prediction 1 40 - -
Vra4g0405 212 Pfam AP2 domain 43 93 IPR001471 GO:0003700|GO:0006355
Vra4g0405 212 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Vra4g0405 212 SUPERFAMILY DNA-binding domain 44 103 IPR016177 GO:0003677
Vra4g0405 212 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Vra4g0405 212 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Vra4g0405 212 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 211 IPR045277 GO:0003700
Vra4g0405 212 MobiDBLite consensus disorder prediction 1 23 - -
Vra4g0405 212 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
Vra4g0405 212 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Vra4g0405 212 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Vra4g0405 212 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 11 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0405 Vra-Chr4 6977569 6978207 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0405 29 212 AP2-EREBP Transcription Factor Family AT4G25490 49.189 1.62e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra4g0405 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0405 - - vra:106758293 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0405 4 6977569 6978207 Vra4g0405 4 6977569 6978207 ECH
Vra4g0405 4 6977569 6978207 Vra2g0826 2 7563673 7570834 PCT