Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0402 ATGAATTTTGAGATCGAATACCCTTTTTCATTTCAATCTTCTTCTGCCATTTTCCAATCATCATCACCCACACCACCTAATAATAATAATAACCCTAACCTACTTTCACATCCTTTAGTTCATGCACAATTTGTAGTTTCACCCAAAAGGAAAGGTGGGAGAAAGAAGTTCAAGGAAACGCGACACCCCATTTATAGGGGTGTCCGACAAAGGAAGGGAAAGTGGGTTTGTGAGCTCAGGGAACCAAAGAAGACCACAAGGATTTGGTTAGGGACATACCCTACACCTGAAATGGCAGCTAGGGCACATGATGTGGGTGCCCTAGCAATTAGGGGCACGTCAGCGATTCTAAACTTTCCAAACTCAGCTTCTTTTCTTCCAATCCTTAACTCCTCTTCACCTAAAGATATTCGAGCAGCCGCAGCAGAAGCTGCTGAGAGTTTCAGACCGATCTCGCTTTCTTCCTTGTCCAATTCTCGTAACAAGAAAACCGGTCGCAAAACTAACTGCAGGAGGGTTTGTAAAAAGGTTTCACCAATGGAGGAAAAGACACCGGAAACAGTGTTGGACACGTCCTTGAATAATAACATGCACAATTTGGATCGTGAAAAATGTGATGTTATCAACAATTGTGATTTATCTTCGACTGTGTTCTTCGATGAGGAGGCATTGTTTAACATGCCTGGTCTCTTGGATAGAATGGCAGAGAGTTTATGTCTTTTTCCATTACCTTCAGTGGATTATTGGGATGATCATGCTTATTTCACAGACTTCAATTTGTGGACTGATTGA 792 0.4205 MNFEIEYPFSFQSSSAIFQSSSPTPPNNNNNPNLLSHPLVHAQFVVSPKRKGGRKKFKETRHPIYRGVRQRKGKWVCELREPKKTTRIWLGTYPTPEMAARAHDVGALAIRGTSAILNFPNSASFLPILNSSSPKDIRAAAAEAAESFRPISLSSLSNSRNKKTGRKTNCRRVCKKVSPMEEKTPETVLDTSLNNNMHNLDREKCDVINNCDLSSTVFFDEEALFNMPGLLDRMAESLCLFPLPSVDYWDDHAYFTDFNLWTD* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0402 263 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vra4g0402 263 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Vra4g0402 263 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 262 IPR045277 GO:0003700
Vra4g0402 263 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677
Vra4g0402 263 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
Vra4g0402 263 ProSiteProfiles AP2/ERF domain profile. 64 120 IPR001471 GO:0003700|GO:0006355
Vra4g0402 263 Gene3D AP2/ERF domain 64 121 IPR036955 GO:0003700|GO:0006355
Vra4g0402 263 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 4 262 - -
Vra4g0402 263 SMART rav1_2 64 126 IPR001471 GO:0003700|GO:0006355
Vra4g0402 263 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0402 Vra-Chr4 6935983 6936868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0402 10 248 AP2-EREBP Transcription Factor Family AT4G25470 42.449 7.61e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra4g0402 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0402 - - var:108332912 446.047