Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0400 ATGAGATTGGAAAAATGCTGGTTTTGCTCTTCAACTGTATACCCTGGACATGGAATCCAATTTGTTCGGAATGATGCAAAGATTTTTCGATTTTGTAGGTCGAAATGTCATAAAAACTTTAAAATGAAGAGAAATCCCCGTAAGGTAAAATGGACCAAGGCATACCGTAGAGTCCATGGAAAGGATATGACACAGGACTCGACCTTTGAGTTTGAGAGAAAGCGAAACAGGCCTGAAAGATATGACAGGAATGTTGCTGAGAATGTCCTTAAGGCTATTCCAAAGATTGATAAGATCAGAGTCACCAGGGAGGAAAGACACCATAAGAATAGGATGAAAGGCAAAAAGGAAAAGCTGCTGAAGGAGGCAGTGAGAGAGTTGGAGCAAGGCATCAGTTTGGTCAAAGCTCCTTCAGTGCTTCAACAGGATCCGTCTCTTACCTTGCCAAAGATCAAGGTTTCTCAACCGCAATCAGAGGAGAATCATGCCATGGAAGAGTAG 501 0.4232 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNVAENVLKAIPKIDKIRVTREERHHKNRMKGKKEKLLKEAVRELEQGISLVKAPSVLQQDPSLTLPKIKVSQPQSEENHAMEE* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0400 166 CDD Ribosomal_L24e_L24 1 54 IPR000988 -
Vra4g0400 166 SMART 4TRASH 6 44 IPR011017 -
Vra4g0400 166 MobiDBLite consensus disorder prediction 143 166 - -
Vra4g0400 166 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
Vra4g0400 166 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
Vra4g0400 166 PANTHER 60S RIBOSOMAL PROTEIN L24 1 166 IPR000988 -
Vra4g0400 166 Gene3D Ribosomal protein L24e 1 68 IPR038630 -
Vra4g0400 166 Pfam Ribosomal protein L24e 1 65 IPR000988 -
Vra4g0400 166 PANTHER BNAA04G10330D PROTEIN 1 166 - -
Vra4g0400 166 MobiDBLite consensus disorder prediction 143 158 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0400 1 166 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 68.072 1.45e-81 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0400 K02896 - gmx:100778077 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0400 4 6906710 6909838 Vra4g0400 4 6906710 6909838 ECH