Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0395 ATGCAATCTCTAAAGTCACACCCTGCTCTTTTATTTTCACTTTTCAATCAATTCTCTTCTTCTCAGTCTCTGACATCCTTCCTCTCTTTCTCAACTAAATGCCGTTTCCTACACTTCAACGAAACCACTTCAATGGTTGATTACCTAAATTCCAACTTCCAGTTCTCCAAAACCCAATCCCTTTATATCTCAAAACGTGTTTCACGGGGCAAATTCCCTCAAAACCCCTTATCAGTGCTCACTTTCTTCAAACAAATAGGCTTTTCGCAAAGCCAGATTCTCTCCTTGATTCGTCAAAGACCCCAGATACTGTTTACAGACGTTGACAAAATCTTAAGATCCAAAATTGAGTTCTTTCAGATGTCTGGATTCCAGGGTCCCGAGTTATGCAGCTTCATTTCAAAGCATCCCTCCATTTTGACTCATAGCTTGAAGAAAACATTGGTCCCCTCAGTTGAAGCTATTAGGAAAATTCTGTGCGACCAGAAAGATTTTATTTTTGTGTTGCACAGATGTGGCTGGATACTCCCAAAGTACAAAAGGTTTATGGATAATGCCGTCTTCTTGGAGAGGTGTGGCATTCTTGGGACTCATCTTGCATTGCTACTCAAACTTCAACCAAGGCTTTTCATTGCACAGCAGTCCACTATTCAAAACCGTGTTTCTCGGGCTGTAGACTTGGGTTTCCGTGAAAATTCAAGAATGCTTGTCCATGCAATTCATACATTAAGTTGTTTGAGCGATAAAACATTTGAGAGAAAGCTGAAACTAATTAATAGCTTTGGGTTTTCCAACGATGAGGGCCTACAAATGTTGAAGAGAACCCCGACTTTGTTCAGAACATCGGAGATGAAGTTGAAATTTGGAATGAAATTCTTCTTGCACACAGTTATGTTGCCTAAGTCAGTCCTTATTCACCGGCCTCATATTTTAATGTACAGCATGGAGGATCGCGTGCTTCCTCGATATAAAGTCTTCCAGCTGTTGAAATCAAAAAATCTCTGCAAGAAAGTCCCCAGTTATATTCATGTGTTGTGCTTGTCTGAGGAAATGTTTTTGGACAAGTATATATCACAGTTCAGGGAAAATGCAGAGGAGTTATTAGTAGCATACAAGGGTCATTATCTGGAGGCATAA 1137 0.4011 MQSLKSHPALLFSLFNQFSSSQSLTSFLSFSTKCRFLHFNETTSMVDYLNSNFQFSKTQSLYISKRVSRGKFPQNPLSVLTFFKQIGFSQSQILSLIRQRPQILFTDVDKILRSKIEFFQMSGFQGPELCSFISKHPSILTHSLKKTLVPSVEAIRKILCDQKDFIFVLHRCGWILPKYKRFMDNAVFLERCGILGTHLALLLKLQPRLFIAQQSTIQNRVSRAVDLGFRENSRMLVHAIHTLSCLSDKTFERKLKLINSFGFSNDEGLQMLKRTPTLFRTSEMKLKFGMKFFLHTVMLPKSVLIHRPHILMYSMEDRVLPRYKVFQLLKSKNLCKKVPSYIHVLCLSEEMFLDKYISQFRENAEELLVAYKGHYLEA* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0395 378 PANTHER CGI-12 PROTEIN-RELATED 40 374 IPR003690 GO:0003690|GO:0006355
Vra4g0395 378 Pfam mTERF 80 171 IPR003690 GO:0003690|GO:0006355
Vra4g0395 378 Pfam mTERF 156 256 IPR003690 GO:0003690|GO:0006355
Vra4g0395 378 Pfam mTERF 245 353 IPR003690 GO:0003690|GO:0006355
Vra4g0395 378 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Vra4g0395 378 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Vra4g0395 378 SMART mt_12 301 332 IPR003690 GO:0003690|GO:0006355
Vra4g0395 378 SMART mt_12 200 230 IPR003690 GO:0003690|GO:0006355
Vra4g0395 378 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Vra4g0395 378 SMART mt_12 234 264 IPR003690 GO:0003690|GO:0006355
Vra4g0395 378 Gene3D Transcription termination factor 3, mitochondrial 177 363 IPR038538 -
Vra4g0395 378 PANTHER EMB|CAB62602.1 40 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0395 Vra-Chr4 6850302 6854011 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra4g0395 mTERF 1.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0395 K15032 - twl:120013477 342.813