Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0391 ATGGAGTTTTGGGGTGCCGAGGTTAAGGTTGGGGAGTCTGTTAAGGTTGACCCAACTGAATTTGAGGCATGCATCCACCTTTCGCAGGCTGCGCTTGGTGAGGCAAAGAAAGACAAACCAAATGAACCTGTTGTTCTGTACTTGAAGGTCGGTGAGCAGAAGGTTGTCCTGGGAACCCTCTCCAGGGAGAAAATCCCTCAAATATCCCTGGAATTGGTTCTGGAGAAGGAGTTTGAACTATCCCACAGTTCAAAAAGTGCCAGCGTACATTTCTGTGGATACAAGGCATATTACTCTGGCGATGATAGTGAGGAAGATGAGTTTACTGATAGTGATGAGGATATTCCATTGGTTAACACAGAGAATGGGAAACTTGAAAAGAAAGCTGAAGAATTGAAGGCACTTGCATCTAAAAAGCCTGATGCTAAGGCTGGTGCTGTAGCAAAAAAAGTCAAGGTTGTTGAGCCAGAGAAAGACAATGAGGATTCGGATGATGATTCTGATGAAGATGATGCTTTGGGAACTTCTGATGAAGAGATGGAGGATGCTGACAGTGATGACAGTGATGAGGAGGATGACAGTGATGAAGATGACGATGAAGAGACCCCTCCTAAGAAGGCCGATTTGGGAAAGAAAAGACCAAATGAATCTGCATCAAAAACTCCCGTCTCTTCCAAGAAAGCTAAAAATGCTACTCCTGAAAAGAAGGATGGTAAGAAAAACTTAAAAGCAGAAACTCCTCAATCCGTGAAGAAAGGTGGAAAGACTCCCAGCAGTGAAGCTAAGGACAAGAGTCCCAAGTCCGGTGGACTTATTTGCAAGAGTTGCAGCAAGTCTTTCAATTCCGAAAGTGGTCTGCAACAACATACCAAGGCCAAGCATGGCGGTCAGTGA 894 0.4474 MEFWGAEVKVGESVKVDPTEFEACIHLSQAALGEAKKDKPNEPVVLYLKVGEQKVVLGTLSREKIPQISLELVLEKEFELSHSSKSASVHFCGYKAYYSGDDSEEDEFTDSDEDIPLVNTENGKLEKKAEELKALASKKPDAKAGAVAKKVKVVEPEKDNEDSDDDSDEDDALGTSDEEMEDADSDDSDEEDDSDEDDDEETPPKKADLGKKRPNESASKTPVSSKKAKNATPEKKDGKKNLKAETPQSVKKGGKTPSSEAKDKSPKSGGLICKSCSKSFNSESGLQQHTKAKHGGQ* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0391 297 MobiDBLite consensus disorder prediction 117 158 - -
Vra4g0391 297 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 293 - -
Vra4g0391 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 297 IPR013087 -
Vra4g0391 297 MobiDBLite consensus disorder prediction 102 297 - -
Vra4g0391 297 MobiDBLite consensus disorder prediction 159 202 - -
Vra4g0391 297 ProSitePatterns Zinc finger C2H2 type domain signature. 273 294 IPR013087 -
Vra4g0391 297 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 293 - -
Vra4g0391 297 SUPERFAMILY beta-beta-alpha zinc fingers 263 293 IPR036236 -
Vra4g0391 297 Gene3D Nucleoplasmin core domain 1 100 - -
Vra4g0391 297 MobiDBLite consensus disorder prediction 229 246 - -
Vra4g0391 297 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Vra4g0391 297 MobiDBLite consensus disorder prediction 272 291 - -
Vra4g0391 297 Gene3D Classic Zinc Finger 272 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0391 Vra-Chr4 6802273 6805427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0391 1 96 C2H2 Transcription Factor Family AT5G03740 52.083 1.72e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra4g0391 NPL 9.2e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0391 - - gmx:100792094 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0391 4 6802273 6805427 Vra4g0391 4 6802273 6805427 ECH
Vra4g0391 4 6802273 6805427 Vra2g0813 2 7369168 7371856 PCT