Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0387 ATGGCAGGGAGAGATAATTCCAGAAACAAAATCCCAACTTGGTCTTCAGATGTAAAAATGAAGAAGAGGGGTAGGCCTCCAAAGTCAAATCGAGGTCGAGGACGTCCTCCTTCTTCTCCTAGCCCTTCTGGAAATCGAGGATATTGTCCTTCTCCTAGCTCTTCCGGAGTTCGAGGATGTTCTCCTTCTCCTAGCCCTTCCCCAGTTCGACCAGATACAGTTTCTAACGTTGGGACTGGATCAGACTTAGTCCCTCACCAGCTCACTGTGAATGTTGGGGAGGACTTGATAGAAAAGGTAGCAGCATTTGGTAAAAGATCCTCTCAAACCGTTTGCATACTTTCTTGTGTGGGTGCCATATCGAGCGTTGTCTTTCGCAAGCCAGGTGTTCCAAGTACTGATACTGTGACGTGGGAGGGTCGCTTTGATATTTTGCAACTATCTGGAAACTATACCTTTGTCCCTGGTCAGGATAATGTGTATGGAGGAAATAACTGCTGGAACCTTACAATATCTGATTGTCGTGGAGCAGTTTTTGGAGGTTCTGTTGTTGGGCCAATGATTGTGGCTACCCCTGTTTATCTTATTCTTGGCACTTTCAAGCTAGGGAGTGTGGAAAAACTAACATCTGGACCCGAATGTGCTACTGCTCCAACATCCGGACCCGCATGTGCTACTGCTCCAACATCCGGACCCGCATGTGCTACTGCTCCAACATCTGAACCCGCCTGTTCTACTGCTCCAACATCTGGACCTCTTCTCATTCCTAAAACAGAGTATGAAGAATCAGAGAGTCTCACTACTCCTGTAACAGCTGATAAAACTTCAGAGAGTCTCACTACTCCTAAAACAGCTGATAAAACTTCAGAGTGTGTGACTACTCCTCAAACAGCTGATAAAACTTCAGAGAGTGTCACTACTACTCCTAAAGCAACTGATGAACCAACAGAAAATGATACTTCTACCACAGAAAAGGTTCCCGCAGGCGAAAAACAGAGTGTCACTCCTGAAATAACTGATAAACCGCAGGAGGAACTCAGTTCTGAAACAGTTGATAAACCACCTGAGAATGTCACTCCTTCAACATCTGATAAGCCACCTGAGGAGGATGTCACTCCTGCAACATCTGATAAACCGCCTGAGAATGTTTCTCCTGCTACAACTAGAAACTCACCAGAGGATGTCGTTGCTTCAACATCTGATACATCATTACCTGCTTCGATAAAGCATAGCGGTGACATGGATTGCAGATAA 1254 0.4553 MAGRDNSRNKIPTWSSDVKMKKRGRPPKSNRGRGRPPSSPSPSGNRGYCPSPSSSGVRGCSPSPSPSPVRPDTVSNVGTGSDLVPHQLTVNVGEDLIEKVAAFGKRSSQTVCILSCVGAISSVVFRKPGVPSTDTVTWEGRFDILQLSGNYTFVPGQDNVYGGNNCWNLTISDCRGAVFGGSVVGPMIVATPVYLILGTFKLGSVEKLTSGPECATAPTSGPACATAPTSGPACATAPTSEPACSTAPTSGPLLIPKTEYEESESLTTPVTADKTSESLTTPKTADKTSECVTTPQTADKTSESVTTTPKATDEPTENDTSTTEKVPAGEKQSVTPEITDKPQEELSSETVDKPPENVTPSTSDKPPEEDVTPATSDKPPENVSPATTRNSPEDVVASTSDTSLPASIKHSGDMDCR* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0387 417 MobiDBLite consensus disorder prediction 1 84 - -
Vra4g0387 417 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 201 - -
Vra4g0387 417 MobiDBLite consensus disorder prediction 377 407 - -
Vra4g0387 417 MobiDBLite consensus disorder prediction 352 369 - -
Vra4g0387 417 MobiDBLite consensus disorder prediction 235 254 - -
Vra4g0387 417 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 17 326 IPR039605 GO:0003680
Vra4g0387 417 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 17 326 - -
Vra4g0387 417 MobiDBLite consensus disorder prediction 260 417 - -
Vra4g0387 417 ProSiteProfiles PPC domain profile profile. 80 222 IPR005175 -
Vra4g0387 417 Gene3D - 85 211 - -
Vra4g0387 417 MobiDBLite consensus disorder prediction 34 62 - -
Vra4g0387 417 CDD DUF296 85 200 IPR005175 -
Vra4g0387 417 MobiDBLite consensus disorder prediction 261 329 - -
Vra4g0387 417 Pfam Plants and Prokaryotes Conserved (PCC) domain 85 200 IPR005175 -
Vra4g0387 417 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0387 Vra-Chr4 6772441 6775580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0387 21 200 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 36.898 8.01e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0387 - - vra:106758291 765.377