Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0386 ATGGGGAGTAAGGTCAGCGACCACCACCTGTCCACCGTGAGATCCATCGTGGGTTCAGAATTCTCCGACATGGAAATCATCAGAGCCCTCCACATGGCAAAAAACGACGTCAATGCGGCCATCAACATCATCTTGGACACTCACTCCGCCCCGAGATTCAATCTCACGCGCCCCAAGAATCAACTTTCAGTCTCTCCTCCAAAACCCTCCCCTTCCACTCCTATCGTCACCAAGCCTAGCTTCAGTGAACAACGCATTGATAATAACAGTGATGATTGGTGGTTGGTGAATTGCGGTGAAGTGACGGGTTTGTCCACGTGTAAAGGGAGGACTATAAATTCCGGTGAGACTGTGATTTTCAAGTTTCCGTCAAAGAAATTATCCTCCCCCTCTACAGGAAAGGGGTTTGGACGGGCTGCGGCGTGTTCGGAGATAGTTCGGTTCTCTACTGAACAAGCTGGGGAGATTGGTAGAATACCAAAGGAATGGGCTCGGTGTCTTTTGCCTCTTGTGCGAGATCATAAGGTTAGGATTGAGGGGAAGTGTAAATTTGCTCCTCAAGTTTTGGGCATCATGGACTCCATTATTTTGTCAGTAAGTGTATTTATCAATAGTTCAATGTTTGCTAAGCATCACCAGGTTTCTCTCAAGGATGCTGCCAACTCGACGGATGAATCTGTGTTTCATCCGCTGCCAACACTGTTTCGTTTGCTGGGTTTAAACCCTTTTAAAGAGGCAGAGTTAACTCCAGGCGATTTCTATTCCAACAAACGTCCTCTCAGTGAAAGGGTAACATTACCACGTGCCAAGTTTGAGCATCCTTCTCAAAATGGCAATGAGAATGACAACGAGGAATCTATTTCTGAAATTGAGGTTGAGAATATTGTTGGTGTTGGATCAAGTGAAGAGTTAGAGGAAATGGATCCCCCTGCTAATCTTCAGTGCAATCTACGACCTTATCAAAAGCAGGCACTTTATTGGATGATCCAGATGGAGAAGGGAAAATGCATGGATGAGACTGCAACAACCCTCCATCCATGTTGGGAGGCATATCACCTTGCTGACAAGAGGGAGCTTATCATTTACTTGAATGCATTTTCTGGTGAAGCTACAATAGAATTTCCCAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTAGTTGCCCATTCAGGAAAGGGTGAATCAGTAGGCAATCAACCCATAGCCAATTCTTTTACTGAAGTTGGTGAAGTTAGTGATAATGTGCACACTTTTTCAAACATACCCAAGAAGGCAACCAAAATTTCTGGTTTTGATAAGCCAACAAAACAAATGAACTCTCTAACAAGTGGTGGCAACTTGATAATATGTCCGATGACTCTTCTTGGGCAATGGAAGGCAGAGATTGAAACTCACGTGCACCCTGGATCTCTTTCTCTATATGTTCACTACGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTCGCTCAGAATGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGAATTTTCCAGTGAGAATGCAGATGATAATGGTGGACTCTTCTCAATTCGGTGGTTTAGAGTTGTTCTTGATGAAGCACATACCATAAAATCTTCTAAGAGCCAAGTTTCTGTTGCAGCTGCTGCTCTAATTGCTGACAGACGTTGGTGTCTAACAGGCACACCAATTCAGGTGGAATAAACTTATTCAGAAACCATTTGAGGGTGGTGATGAAAGAGGGCTCAAGTTAGTTCAATCAATTTTGAAGCCAATTATGTTGAGGAGAACTAAACATAGTACAGATCGAGAGGGCAAGCCCATTTTAGTTCTGCCTCCAGCTGATATGCAGGTAATTTACTGTGAACAGACAGAAGCTGAAAATGACTTTTATGGAGCTCTATTCAAAAGATCTAAGGTAAAGTTTGATCAGTTTGTTGAGCAAGGACGAGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGATTTTGCGGATCTAAACAAACTAGCTAAGCGCTTCCTTAGAGGAACATATAATGCTTCGGATGGTGAAGTAAAAGAGGCACCTTCACGGGCTTATGTTCAAGAAGTTGTGGAGGAGCTACGTAAAGGGGAGCAAGGAGAGTGTCCAATATGCCTTGAAGCATTTGAAGATGCAGTATTGACCCCTTGCGCTCACCGCTTATGCAGGGAATGCCTCTTGGCAAGTTTGCGAAATGCTACTTCTGGCCTATGTCCTGTTTGTAGGAAACCAGTCAACAGGCAGGATCTAATCACCGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAATCATGCAAGGTAACTGCTCTTTTGAATGAACTTCAAAATCTTCGCTCATCAGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATCCCCTTCGCTCGGAATAACATTTCATTTGTTCGTCTTGATGGGACTCTGAATCTGCAACAGCGGGAGAAAGTAATCAAGCAATTTTCAGAGGACAGCACGACTCTGGTGTTGTTAATGTCACTAAAAGCTGGTGGAGTGGGTATAAATCTAACTGCAGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCCATTAAACGGTTTATTGTGAAGGGGACCGTTGAGGAGAGAATGGAAGCAGTACAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAGGTTCGAAGTGCGCGCATTGAGGAGTTAAAGATGCTTTTTACTTAG 2932 0.4376 MGSKVSDHHLSTVRSIVGSEFSDMEIIRALHMAKNDVNAAINIILDTHSAPRFNLTRPKNQLSVSPPKPSPSTPIVTKPSFSEQRIDNNSDDWWLVNCGEVTGLSTCKGRTINSGETVIFKFPSKKLSSPSTGKGFGRAAACSEIVRFSTEQAGEIGRIPKEWARCLLPLVRDHKVRIEGKCKFAPQVLGIMDSIILSVSVFINSSMFAKHHQVSLKDAANSTDESVFHPLPTLFRLLGLNPFKEAELTPGDFYSNKRPLSERVTLPRAKFEHPSQNGNENDNEESISEIEVENIVGVGSSEELEEMDPPANLQCNLRPYQKQALYWMIQMEKGKCMDETATTLHPCWEAYHLADKRELIIYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLVAHSGKGESVGNQPIANSFTEVGEVSDNVHTFSNIPKKATKISGFDKPTKQMNSLTSGGNLIICPMTLLGQWKAEIETHVHPGSLSLYVHYGQSRPKDAKSLAQNDVVITTYGILASEFSSENADDNGGLFSIRWFRVVLDEAHTIKSSKSQVSVAAAALIADRRWCLTGTPIQVE*TYSETI*GW**KRAQVSSINFEANYVEEN*T*YRSRGQAHFSSASS*YAGNLL*TDRS*K*LLWSSIQKI*GKV*SVC*ARTSSS*LCFNIGVTFTSSAML*SSISCNESR*YSRFCGSKQTS*ALP*RNI*CFGW*SKRGTFTGLCSRSCGGAT*RGARRVSNMP*SI*RCSIDPLRSPLMQGMPLGKFAKCYFWPMSCL*ETSQQAGSNHRPY*ESVSGGY*EELGRIMQGNCSFE*TSKSSLIRLQKHCFQPVDCFSRPLADPLRSE*HFICSS*WDSESATAGESNQAIFRGQHDSGVVNVTKSWWSGYKSNCSF*CFCHGPMVESSC*GTSCYAYSSHWTNKEGGH*TVYCEGDR*GENGSSTST*TTNDFWCLD*SRGSKCAH*GVKDAFYL 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0386 941 SMART ultradead3 313 604 IPR014001 -
Vra4g0386 941 Pfam HIRAN domain 100 199 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vra4g0386 941 PANTHER DNA REPAIR PROTEIN RAD5 100 577 - -
Vra4g0386 941 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 375 576 IPR014001 -
Vra4g0386 941 Pfam SNF2-related domain 320 577 IPR000330 GO:0005524|GO:0140658
Vra4g0386 941 Gene3D - 374 580 IPR038718 -
Vra4g0386 941 CDD DEXDc_SHPRH-like 317 576 - -
Vra4g0386 941 MobiDBLite consensus disorder prediction 266 287 - -
Vra4g0386 941 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 100 577 - -
Vra4g0386 941 SMART HIRAN_2 96 203 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vra4g0386 941 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 576 IPR027417 -
Vra4g0386 941 MobiDBLite consensus disorder prediction 57 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0386 Vra-Chr4 6759010 6771224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0386 1 576 RAD5 or RAD16-like Gene Family AT5G22750 58.185 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra4g0386 SNF2_N 1.1e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0386 K15505 - gmx:100794452 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0386 4 6759010 6771224 Vra4g0386 4 6759010 6771224 ECH