Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0385 ATGGAGCCTCCCGTTGTGAGATCTAGAGGTCGCCCGCGTAAACGGAGAAGAGAAGAGGACGGAACTGTCGCCGGCGATCCGAAAACGCTTCCTGAGGCGAAGAAGGCGCCTCCGGTTGCCCTGGTTGGTCAATACGTGCTGAAAGAGTTCCGCGGGAACACGGTTCTTCTCGGTAAAGTCGTCCGCTACGAGAGCGGGTTATACAGAGTCGTGTACGAGAGTGGCGGATTCGAGGATTTAGATAGCATCGCGATTCGTAGGATACTTCTCCTTGATAGCTATTTCGACGATGATTTAATTCGGAGGAAAGGCGAATTGGAGGAGTCGGTGTTGCCGAAGATTGCGGAGGTACGGGAGAGAGGTTCGAGCGAATTGCACGGCGATTTATTGGTTGAGAGCGAAGAAGAACGAGATGAAACGGACGACGAGTCGTGCAGCGAGGCTAGGGATTTGAGTTCCGATTCCGAAACGCCGATACCGTCTGCACCCACGCTGCCGCCTTCTTCTGGAACAATTGGCGTTCCGGAATCTTGCGTTCTGAATCTCCTTTCAGTGTACGGATTCTTGCGGTCGTTTAGCATTCGTCTGTTTCTCAGTCCTTTTACTTTAGACGAGTTTGTCGGTGCTTTGAACTGTAAAGTTTCTAACACGTTGCTTGATGCTATTCACATTTCGCTGATGCGTGTTTTGAGACGTCACCTTGAAAACATTTCACCAGATGGTTCGCGGCGCGCAACAAAATGCCTTAGGTGCAGTGATTGGAGTCTGCTTGATGCTTTGACTTGGCCTGTTTTTACGTTTCAGTATTTAGCAATTTATGGTTACACAAAGGGACCTGAGTGGAAAGGATTTTATGATGAAATCTTTCATGGCGAGTACTATTTATTGTCTGCAAGTAGGAAACTGATGATTTTGCAAATTCTCTGTGATGATGTTCTGGCATCTGAGGAGTTTAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGATTGATTATGATAATGAAGATAGCCTTCCTACTGAAATTGGGCCCAGAAGAGTTCATCCAAGATATTCCAAAACTACTGCCTGCAAGGATAGTGAAACTAAGAAGTATGGTTCAGAATTGAATGCTGAGGATGTTGATGGCAATGGAGACGAGTGCCGCTTGTGTGGCATGGATGGAACTTTACTTTGTTGTGATGGTTGTCCTGCAGTTTATCATTCAAGGTGTATTGGTGTGATGAAGATGCATATACCGGATGGGGAATGGTATTGTCCAGAGTGCAAAATAAATATGATTGGGCCTTCTATTGCACGGGGAACATCACTGAAAGGTGCTGAAGTATTTGGAAAGGATTTGTATGGGCAAGTTTTCATGGGTACATGCGACCACTTACTGGTACTCGATGTCAACAGTGATGAATTTTGTCTTAAGTACTACAATCAGAATGACATTCCTGAAGTTCTCCAAGTCCTGACTGCATCTGAGCAACTTAGACCTATATACAATGGCATTTGCATGGCAATGTTAGAGTATTGGAAAATTCCAGAAAACTTCTTATCCATTTGTGTCACAGGTGTACCGCAAGTAAACTTAACAAATTCAAATACAGACGTGAAACTTTCTCCCATGATTGAAGAAGAGAATCAAGCTCTCGAGGAGAACATTCGAACAATTGCTTTTTGTGGGGACTGGGTGAAGTTGATGGATGATTGGTTAGCTGAATTTTCTACAATCCAAAGTGCTGCAGTTACTCTTGGAACTACACAGAAAGGTGCAACATGTGGGAGGCGTAAGAAACAGTTATCTATCAACAAAGTTACAGCCGGTGCTTGTCCTCAAAATTTTGTATGGTGGCATGGCGGGAAATTTTCCCAATGTGTATTCCAGAAAGCTGTTTTGCCAAAATCCATGGCCAGAAAAGCAGCCCGACAAGGTGGTTTGAGGAAAATTTCTGGTATATTATATGCTGACGGCTCTGAGATTCCTAAAAGAAGCAGACAGGTTGTTTGGAGAGCAGCAGTTCAAAGTAGTAGGAATGCATCCCAGTTGGCCCTTCAGGTTCGATATCTAGATTTTCATGTCAGATGGAACGATCTGATTCGTCCCGAGCACAACCTCCTAGATGTGAAAGGTCAAGATACTGAAGCATCTGCTTTTAGGAATGCAAATATTCATGAAAAAAGAATTGTGGAGGGCAAAATTTTGTATAGAGTAGCCTTTGGAAGCCAAAAACATCTTCCTTCTCGGGTAATGAAACATGTCGAAGTAGAGCGAGGTCCTGAAGGAAAGGAAAAGTTCTGGTTTTCTGAAAAACGGATTCCTTTATATTTGGTAAAAGAGTATGAAATGCGTAATGGAAAAATGCTATCTGATAAAGAGTACATGTACATTACATCTCAGTTGCTGCACAAAAGGCGGTTGAAAGCTACCTACAAGGACATTTTTTTTTACCTTACCTGCAAGAGAGACAAATTGAACATGCTATCGTGCTCTGTTTGTCAGCTGGGTGTTTTAATTGGGAATGCTCTCAAGTGCAGTGCCTGTCAAGGTTATTGTCACACGGGTTGTTCAGTGAGTTCAACTGTCTCTACATGTGAAGAAGTTGAGTTCTTGGCCACATGCAAACAATGTCATCATGCCAAATTACTTACTAAAAAAGAGTCTTGTAATGAGTCGCCAACTAGTCCCTTACTTTTAGAAGGACAAGAACAAAGCACTTCAGCAGTTCTGAAGGGATCAGGGCCTAAATGTGATGGTCAAGAATTGATGTCTTCTAGGACAAAGAATAGTCGATCTGACACAAAACGATTTGCTTCTGATTTCCCTTTGGAAACAAAAGGCCGTAGCAGAAATTGTTCTTGGGGTATTATATGGAAAAAGAAAAACAACGAAGATACGGGCTTTGATTTCAGGCTCAAGAGCATTCTTCTAAAAGGAGGTTCAGGCCTGCCTCAATTGGATCCTGTTTGTCGCTTGTGCCAAAAACCTTATAATTCTGATCTAATGTACATCTGTTGTGAAACATGTAAACATTGGTACCATGCTGAAGCTGTGGAACTTGAAGAGTCCAGACTTTTTGATGTGCTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAGTCGCCTGTATGTCCTTTCTCTGATTTGAGTTACAGGACTCAAGAGGACAAGAGGCCTTCAAGGGCTTCAAAGAAAGATTACTTCGGGGGAGATTCTGATTCTGGTACACCTATTGACAGGAGGACATATGAGCCTGCAACTCCTATCTGTCCTGCAGTGGATTTCTCTAGACAAGACAATGATCCTCTGCTGTTCTCCTTTTCAAGTGTTGAGCTGCTTGCAGAACCCGAGTTAGATGCAAATGGGGTGGGCAATACTGTCTCTGGGCCAGGACTTCCTAAGATATCTAAACGTGAGAGGGAGAATAATGGTTTTTTCAGAGGTAATCTTCACGCTGAGTTCTCAACCAGCAATGAGATGCTTTCCAAATCAGTAAAAGATTTATCCCCTTCTGTTGAAGATGCCTCTGCTAACTGCAGTCTTCTGAAGGACCCCGAAATTGTAAATTATCACGAGTTCGTGGATTTTGAGCCTCATACCTACTTCTCGCTGACTGAACTGCTCCACTCTGATGAGAATATTCAATCTGAGGAAGCTGACGCTTCTCGGGTCTTCTCGGGTTGTTTGAAAAATTCTTCTTGTGTTCCTGAAGGATGTGGAACTGTTAATTTAGCATCCAACTGTGAGCCTACAAATTTGTTACAAGGAAATGTTTATAGTTGTCGGCAATGTTCACAAAAGGAACCGCTCCCTGATCTCCATTGTGAGATTTGTAGGATTTGGATTCACAGGCAGTGTTCACCTTGGGTGGAATCACCATCTCGGCTTGCAAGTTGGAGATGTGGTGATTGCCGGGAATGGCGATAG 3918 0.4349 MEPPVVRSRGRPRKRRREEDGTVAGDPKTLPEAKKAPPVALVGQYVLKEFRGNTVLLGKVVRYESGLYRVVYESGGFEDLDSIAIRRILLLDSYFDDDLIRRKGELEESVLPKIAEVRERGSSELHGDLLVESEEERDETDDESCSEARDLSSDSETPIPSAPTLPPSSGTIGVPESCVLNLLSVYGFLRSFSIRLFLSPFTLDEFVGALNCKVSNTLLDAIHISLMRVLRRHLENISPDGSRRATKCLRCSDWSLLDALTWPVFTFQYLAIYGYTKGPEWKGFYDEIFHGEYYLLSASRKLMILQILCDDVLASEEFKAEMNMREESEVGIDYDNEDSLPTEIGPRRVHPRYSKTTACKDSETKKYGSELNAEDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPDGEWYCPECKINMIGPSIARGTSLKGAEVFGKDLYGQVFMGTCDHLLVLDVNSDEFCLKYYNQNDIPEVLQVLTASEQLRPIYNGICMAMLEYWKIPENFLSICVTGVPQVNLTNSNTDVKLSPMIEEENQALEENIRTIAFCGDWVKLMDDWLAEFSTIQSAAVTLGTTQKGATCGRRKKQLSINKVTAGACPQNFVWWHGGKFSQCVFQKAVLPKSMARKAARQGGLRKISGILYADGSEIPKRSRQVVWRAAVQSSRNASQLALQVRYLDFHVRWNDLIRPEHNLLDVKGQDTEASAFRNANIHEKRIVEGKILYRVAFGSQKHLPSRVMKHVEVERGPEGKEKFWFSEKRIPLYLVKEYEMRNGKMLSDKEYMYITSQLLHKRRLKATYKDIFFYLTCKRDKLNMLSCSVCQLGVLIGNALKCSACQGYCHTGCSVSSTVSTCEEVEFLATCKQCHHAKLLTKKESCNESPTSPLLLEGQEQSTSAVLKGSGPKCDGQELMSSRTKNSRSDTKRFASDFPLETKGRSRNCSWGIIWKKKNNEDTGFDFRLKSILLKGGSGLPQLDPVCRLCQKPYNSDLMYICCETCKHWYHAEAVELEESRLFDVLGFKCCKCRRIKSPVCPFSDLSYRTQEDKRPSRASKKDYFGGDSDSGTPIDRRTYEPATPICPAVDFSRQDNDPLLFSFSSVELLAEPELDANGVGNTVSGPGLPKISKRERENNGFFRGNLHAEFSTSNEMLSKSVKDLSPSVEDASANCSLLKDPEIVNYHEFVDFEPHTYFSLTELLHSDENIQSEEADASRVFSGCLKNSSCVPEGCGTVNLASNCEPTNLLQGNVYSCRQCSQKEPLPDLHCEICRIWIHRQCSPWVESPSRLASWRCGDCREWR* 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0385 1305 SMART testlast3 176 236 IPR018501 -
Vra4g0385 1305 Pfam PHD-finger 383 425 IPR019787 -
Vra4g0385 1305 Pfam DDT domain 178 233 IPR018501 -
Vra4g0385 1305 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 547 1302 - -
Vra4g0385 1305 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 534 - -
Vra4g0385 1305 ProSiteProfiles Zinc finger PHD-type profile. 380 427 IPR019787 -
Vra4g0385 1305 CDD PHD2_CHD_II 383 424 - -
Vra4g0385 1305 SUPERFAMILY FYVE/PHD zinc finger 982 1039 IPR011011 -
Vra4g0385 1305 PANTHER PHD FINGER FAMILY PROTEIN 1 534 - -
Vra4g0385 1305 PANTHER PHD FINGER FAMILY PROTEIN 547 1302 - -
Vra4g0385 1305 CDD PHD_SF 1257 1301 - -
Vra4g0385 1305 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 280 323 IPR028942 -
Vra4g0385 1305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 977 1046 IPR013083 -
Vra4g0385 1305 MobiDBLite consensus disorder prediction 126 169 - -
Vra4g0385 1305 ProSitePatterns Zinc finger PHD-type signature. 383 424 IPR019786 -
Vra4g0385 1305 SMART PHD_3 986 1034 IPR001965 -
Vra4g0385 1305 SMART PHD_3 382 425 IPR001965 -
Vra4g0385 1305 SMART PHD_3 826 875 IPR001965 -
Vra4g0385 1305 SMART PHD_3 1257 1302 IPR001965 -
Vra4g0385 1305 SUPERFAMILY FYVE/PHD zinc finger 375 430 IPR011011 -
Vra4g0385 1305 ProSiteProfiles DDT domain profile. 176 236 IPR018501 -
Vra4g0385 1305 MobiDBLite consensus disorder prediction 1 32 - -
Vra4g0385 1305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 429 IPR013083 -
Vra4g0385 1305 MobiDBLite consensus disorder prediction 1052 1078 - -
Vra4g0385 1305 MobiDBLite consensus disorder prediction 905 931 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0385 Vra-Chr4 6744481 6752404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0385 267 517 EF-hand Containing Proteins AT5G22760 46.545 1.24e-70 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vra4g0385 DDT 3.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0385 - - var:108332913 1439.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0385 4 6744481 6752404 Vra4g0385 4 6744481 6752404 ECH
Vra4g0385 4 6744481 6752404 Vra2g0807 2 7259041 7270587 PCT