Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0377 ATGGCGGAGGACCGGAGTGAGGTGAGTGATTACAGTTCGGAGGACGAAGGAACCGAAGATTACAGGCGCGGAGGGTACCATGCGGTTCGAATTGGTGACACTTTCAAGAATGGGTGCTATGTGGTACAGAGCAAGCTTGGTTGGGGTCATTTTTCCACTGTGTGGCTCGCTTGGGACATTAACAAATCGCGATATGTTGCCTTAAAAATTCAAAAGAGTGCTCAGCATTACACTGAGGCGGCAATGGACGAGATAAAGATACTCAAACAAATTGCTGATGGGGATCCAGATGACAAAAAATGTGTTGTAAAGCTTCTGGATAACTTTAAGCATTCAGGGCCTAATGGCCAGCATGTTTGTATGGTTTTTGAATTCCTTGGTGATAATCTTCTTACCCTTATCAAGTATAGTGATTACCGAGGTGTTTCCCTTCCTATGGTCAAGGAAATTTGTTTCCATATTTTGGTGGGTTTGGATTACTTGCACCGTGAGCTTTCTGTAATACACACTGATTTGAAGCCTGAGAATGTCCTGCTTCTGTCTCCCATAGATCCATCTAAGGATCCTAGAAAATCAGGTGTTCCACTTATCCTTCCAAACACGAAGGATAAGACTGTTACAAAAAATGGGATAACAATAGCCAATAAGAATGTTAATGGAGATCTAACCAAGAACCAGAAAAAGAAATTGCGAAAAAAGGCTAAAAAGTTAGCCCAGGGCTGTGTTGGAAGGGAGCATGCCGAGGAAGCTGAGGAGGATTCCAAAGCACCTGATGAACAAGATGATTGTAGTACTGATGTGAAGCCAAGTGTAGAATCTGGTGACAATAAACCTAATAGCCCTGGTAGTAAAGATGAATCATCAAAGACTTCTGAAAATAAGGATGTTCCCCAAGGAAGTCATGGGCACAGGAGAGGTAGCCGCTCTACAAGAAAGAAGTTGCTTGCATCTGTCGATCTTAAGTGCAAGCTAGTTGATTTTGGTAATGCTTGTTGGACCTATAAACAATTCACAAATGATATTCAGACAAGGCAGTATAGGTGTCCCGAAGTTCTTCTTGGATCTAAATATTCAACTCCAGCTGACCTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACCGGCGATGTTCTTTTTGATCCTCATAGTGGTGACAACTATGACAGGGATGAGGATCATCTAGCACTGATGATGGAGCTTCTTGGGATGATGCCTCGCAAGATTGCACTTGGTGGCCGCTATTCCCGTGATTTTTTCAACAGATATGGCGATTTGAGACACATCCGGCGATTGCGTTTCTGGCCTCTTAATAAGGTGATGATAGAGAAGTATGATTTCAGTGAAGAAGATGCAAATGGCATGGCTGAGTTCCTTCTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCAACCGCTGCACAGTGCCTTCAGCATCCATGGTTCAGTGCTGGTCCCCGGACTCTTGAGCCCTCAGTAGCTGCTTCACAGCATGCTGCAATTGACGGGGAAATATCTGAAAAGATGCAGAGGGAAAAAGAGCAGGAGGGTGTGGAAGTTGGTATAGGGAATATGGCCATAGATGGAAATTCAAAGTAA 1599 0.4384 MAEDRSEVSDYSSEDEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDINKSRYVALKIQKSAQHYTEAAMDEIKILKQIADGDPDDKKCVVKLLDNFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVSLPMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRKSGVPLILPNTKDKTVTKNGITIANKNVNGDLTKNQKKKLRKKAKKLAQGCVGREHAEEAEEDSKAPDEQDDCSTDVKPSVESGDNKPNSPGSKDESSKTSENKDVPQGSHGHRRGSRSTRKKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVMIEKYDFSEEDANGMAEFLLPLLDFVPEKRPTAAQCLQHPWFSAGPRTLEPSVAASQHAAIDGEISEKMQREKEQEGVEVGIGNMAIDGNSK* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0377 532 MobiDBLite consensus disorder prediction 224 311 - -
Vra4g0377 532 Gene3D Transferase(Phosphotransferase) domain 1 123 483 - -
Vra4g0377 532 MobiDBLite consensus disorder prediction 287 302 - -
Vra4g0377 532 CDD STKc_SRPK 29 482 - -
Vra4g0377 532 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Vra4g0377 532 SUPERFAMILY Protein kinase-like (PK-like) 35 491 IPR011009 -
Vra4g0377 532 MobiDBLite consensus disorder prediction 269 286 - -
Vra4g0377 532 SMART serkin_6 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0377 532 PANTHER SERINE KINASE-LIKE PROTEIN 8 532 - -
Vra4g0377 532 Pfam Protein kinase domain 317 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0377 532 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0377 532 ProSiteProfiles Protein kinase domain profile. 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0377 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vra4g0377 532 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 532 - -
Vra4g0377 532 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Vra4g0377 532 MobiDBLite consensus disorder prediction 238 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0377 Vra-Chr4 6668906 6673031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0377 6 532 EF-hand Containing Proteins AT5G22840 69.173 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vra4g0377 Pkinase 2.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0377 K08832 - gmx:100791829 984.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0377 4 6668906 6673031 Vra4g0377 4 6668906 6673031 ECH
Vra4g0377 4 6668906 6673031 Vra2g0800 2 7192297 7196273 PCT