Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0373 ATGGCGGTTGCGGGTGTGCATAATGTGACTGCGCTCGAATCTACTTTCCTGAGGGAATCCCTTTCTCAGTCACCTGGGAGGCAAGGAGATGGAGGGAGGGGAGGCACACGGTCGTCTTCGGTCATGCAAATGTGGAGAGAGATTGAGGATGAGCAGGCAGTAAGACCAGTTCAAGGAAGACCTGGGGAGGTTTTACTTCAACAAACGAGTGATGAGGTGGTTGTGGACTCCTCGCAGGAAAATATGCCATATAGCAACCAGAGAGAAGGACGTGTAATAGAGGATGCAGGTTTGGGAGAGAATGATTCTGAGACCTGGTCACAAAGTCAGAATGAGTTCCATGACGAACAAGAGGAATTGAATAATTCTAGCCACGAAAACTCTGATTTTGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATATTCAGGGAGTGGATGAATAGTGGTTCCAGGGATCGTGCATCAAATAATTCCCAAGGAAACAGAGGAGAATGGCGCGGGGAAAATGAGCAGGAAAGGGACGGGGAAACGGATCAGGAACGAGTGTGTATCATAAGGGAGTGGGTGCAGACGAGTAGCCCACAGAGAGGTGCTTCTTCTGGGGAAAATAGGGAAGAACAATCTTCTGAAACTGGTACCCAAATTGAATGTGTTCGTGATGGATTTGTTAATCAGAACGACGGTCAAGCTGAGCATACACGGAGGGGAATCCGTAAATTATGTGGCCGACAGGTGCTGCTTGATATGCTTAAGAAGGCCCAGATGGAAAGACAAAGAGAAGTTCAGGAATTATTGGACCATCGGGTTGTATCCCATTTCCCCCATCGTAATCGTATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCGATTGGTAATAACAGGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAGAAGCAGACTGTATCAGGTCTAAGAGAAGGATTCTTTTCCAGAAAGGACAGTTTTGGTTGCAGTCAAGCAACCAGTAACCTATCTGATACCTCTTCCGAGAGTGATATTGATGTTAATGCAATTGAACAAACTGGAGCTAGCAGTTCACAAGCCGTCCCAACTGTACATTCTGAACAATCCCGGCCTATTAACAATGGAAGTGACGGACTTGAGATACCATGTGATCAGATTTGTTCACAAGGAACCCCTTGTGAGAAATTAGACTGGCAAGGCTCTGCCGCTCATATAGAAAAAAATGATCGGGAATCATCTTCCAGTATGAGAGTTGAAAGAGGAGATGACACTGGACAAACTGTTGCTATGATGTCAGCTGAAGATTCTTCTAATGACCTTTCCCAACAAAGCTTGCAAATTGAAGATATAGAGGATGACAACATACAAGAGTTAAGCGAGGTACCTACTGAGCAATCTCAGTGGGGAGATATAACTAATGACGAAAGCAATTTATCAAATCAGGATGATCGTGTATATAGCAATATCGTTGGTGATGTAGATTTGATTGAATCTATTGCTCTGGAAGTAGAACATCAGGAAGAAGTTATTATTGAAAACGACAGAAGTGACTGGCATCAAAGTGTGGATGTTCATCAGCTCAGTAATACAACAAATGAGTGGCCCCAAAACATAATGGGTAGCGAAGATGGAGAAAATTCTCGTATGCAAGAGCAAGAAGCCCCTGAAGCGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGGTTTTATTTTCCCGAAGATGACAATGTGTATAGCGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAGTCGTATGTTGAAAGGCAAGGTCACGCTCATGTTGAATGGGAACTGCAAGAAACAACCCCTTCTTCTCCCTTGGCAGAACAAGACTCTGGACAAGAAACTAGGGATCCAGTTACTGGTCCTCAGGGTACTGTTAATAGCTCACTTGACCACCGTCCCTTGCCACCAACACCTCCGCCTCAGCCTTTATGGGATCGGCACTCTCGCCATGACAATTGGTCACAGAGTGACATAAATAATCAGCGCCTAGGAATTGTGCGTTCATTTGCGGGACATAACTGCTTTTCTTTAGCTGATGAGTGGGATATTGTTAATGACTTAAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAAAGAATGCTGGAAGCCTGTATGGATATGCAGCTTGAGTTACAACGCTCAATAAGACAAGAAGTCTCTGCAGCCTTAAATCGCTCAACTGGTTCATCAGGAACACATGACCGTGTTTCACCTGACGATAAATCTAAATGGGAATGTGTGAGGAAAGGAGTTTGTTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGACATATGTGCACATGTTCAAAATGTGCAAATGATTTGCACCAAAGTAAAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATACGTGCTTATTCTATACAATAG 2577 0.4397 MAVAGVHNVTALESTFLRESLSQSPGRQGDGGRGGTRSSSVMQMWREIEDEQAVRPVQGRPGEVLLQQTSDEVVVDSSQENMPYSNQREGRVIEDAGLGENDSETWSQSQNEFHDEQEELNNSSHENSDFGEVERERVRQIFREWMNSGSRDRASNNSQGNRGEWRGENEQERDGETDQERVCIIREWVQTSSPQRGASSGENREEQSSETGTQIECVRDGFVNQNDGQAEHTRRGIRKLCGRQVLLDMLKKAQMERQREVQELLDHRVVSHFPHRNRIQALLRGRFLRNDRSIGNNRSTSIAESELGLLRQKQTVSGLREGFFSRKDSFGCSQATSNLSDTSSESDIDVNAIEQTGASSSQAVPTVHSEQSRPINNGSDGLEIPCDQICSQGTPCEKLDWQGSAAHIEKNDRESSSSMRVERGDDTGQTVAMMSAEDSSNDLSQQSLQIEDIEDDNIQELSEVPTEQSQWGDITNDESNLSNQDDRVYSNIVGDVDLIESIALEVEHQEEVIIENDRSDWHQSVDVHQLSNTTNEWPQNIMGSEDGENSRMQEQEAPEAWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWELQETTPSSPLAEQDSGQETRDPVTGPQGTVNSSLDHRPLPPTPPPQPLWDRHSRHDNWSQSDINNQRLGIVRSFAGHNCFSLADEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGTHDRVSPDDKSKWECVRKGVCCICCESNIDSLLYRCGHMCTCSKCANDLHQSKRKCPMCQAPVVEVIRAYSIQ* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0373 858 MobiDBLite consensus disorder prediction 646 681 - -
Vra4g0373 858 MobiDBLite consensus disorder prediction 186 215 - -
Vra4g0373 858 Pfam Zinc finger, C3HC4 type (RING finger) 804 850 - -
Vra4g0373 858 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 858 - -
Vra4g0373 858 MobiDBLite consensus disorder prediction 536 563 - -
Vra4g0373 858 ProSiteProfiles Zinc finger RING-type profile. 806 845 IPR001841 -
Vra4g0373 858 PANTHER PROTEIN, PUTATIVE-RELATED 1 858 - -
Vra4g0373 858 MobiDBLite consensus disorder prediction 109 133 - -
Vra4g0373 858 MobiDBLite consensus disorder prediction 1 133 - -
Vra4g0373 858 MobiDBLite consensus disorder prediction 13 45 - -
Vra4g0373 858 MobiDBLite consensus disorder prediction 149 164 - -
Vra4g0373 858 Coils Coil 734 761 - -
Vra4g0373 858 MobiDBLite consensus disorder prediction 70 86 - -
Vra4g0373 858 MobiDBLite consensus disorder prediction 165 183 - -
Vra4g0373 858 CDD mRING-HC-C3HC5_NEU1 806 844 - -
Vra4g0373 858 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 784 856 IPR013083 -
Vra4g0373 858 Coils Coil 436 456 - -
Vra4g0373 858 SUPERFAMILY RING/U-box 796 851 - -
Vra4g0373 858 MobiDBLite consensus disorder prediction 645 702 - -
Vra4g0373 858 MobiDBLite consensus disorder prediction 148 215 - -
Vra4g0373 858 MobiDBLite consensus disorder prediction 357 376 - -
Vra4g0373 858 MobiDBLite consensus disorder prediction 462 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0373 Vra-Chr4 6598449 6603735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0373 806 852 C3H Transcription Factor Family AT3G06140 38.298 3.85e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0373 - - vun:114184870 1598.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0373 4 6598449 6603735 Vra4g0373 4 6598449 6603735 ECH
Vra4g0373 4 6598449 6603735 Vra2g0791 2 7060098 7064979 PCT