Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0372 ATGGCCAAGGGCACCGATTCCGACGAGTTCGTGTTGCTTTCTAGGGTCCGGACTGGTCTCAAGAGGGAGTTCGCGTTCGCAATGAAGGCCCAATCTGAGATCTGCGGCGCTTCTCTGGGCCGAACGCGGGCCAGCAAGAACCGGCCTGACCCTCCTGTTCAGACTGCATCTGCCCGGAAACGGTCCAGGAAGACCGTCGAGCCGAAAACGTCGGAGGACGTCTTGAGCGAGGAAGAGGCTAAGAGCGACGTGGTGGATCTTCAGAGCGATGATGAGCCGAAGAATAATCACGCGGGAGAGTCAGAGTCTGCGGCAATGTTGGTTTGTGAAGAGGAAACGAAGAGTGATGTGGCCATTGAAAATATTGTGGGCGAAGAGGAGCCGAAGGTGTTGGAAACTGTTATCTGCGAAGAGGAGCCAAAGGTGTTGGAAACTGTTATCTGCGAAGAGGAGCCGAAGNTGTTGGAAACTGTTATNTGNGAAGAGGAGCCGAAGGTGTTGGAAACTGTTATCAGCGAGGAGGAACCGAAGGCGTTAGAAATTGTCGTGGGCGAAGAGGAACCGAAGGTGTTTGATAGTGGTGTCAATGAGGAGGAGCCTGTTGTGGCTGAGACGTTGAAGGAAGAGGTTGTGGATGAGACGGCACAACCTCTTGGCGAAATTAATGAGGAATCGGAGAAGAGTGTTTCGGGAGATAAGGTACCTATTGGGGAAACCCTTGTTTTGGAGAATGATGATGATAAGGGGAAGAAGTATAAGAAGAGAACGAAAAAGTGGATTGAGAGGCTTCCGACTGTGAGAAGGTTTACGCGGTCGGCATTGAAGGAAAAACCCGAGGAAGCAAATGACGAGAAAAATGTTGGTGCGGTTGGAGTTGATGATGTTATTAAGAGGGAATCAGAAACTGAGGCTTCGGTGTTAATGACCACTCCTATTTCGGGAAGATTTTCGAATTCTAGGTTGAGGAAATTTCCTTCCAAGTTGAAGGATCTTCTGGCTACGGGCATTCTTGACGGATTGACAGTGAGGTACATGAAAGGATCAAAGGCTCGAAAGAATGGAGAAACAGCGCTTCAAGGAGTGATTCGAAACTCTGGGATTCTGTGCTTTTGTGAGAGTTGCATGGGGATTGAGGTGGTCACGCCCACTGTGTTTGAGCTGCATGCTGGCAGTGCAAATAAACGTCCCCCGGAGTATATTTACATGGATTGTGGGAATGGTGGAAATAACCTCCGTGATGTCATGAATGCCTGCTGCGATTTGCCATTGGAGTCAATGGAGGAAGCCGTCCAAAAACTACTTGGTGGCTTCACTATGAACAAATCTTCGATCTGTTTACACTGCCGAGGAGCATGCAAGGGTGTGTCAAAGCTCTTATGCGATTGTTGCTTAGCAAGTCCCCCTCAAATAGCCACAGCAAGTAGCATAAAGATTTCATCACCGGTTCAATCAAGATCACCAGAGCCAGTAATGGTTCAAAAATCACTAGACAATGAGATGCAGTCAAATTCATTAGACAATGGAGTGCAACCAGACTCGCTAAATAATTGCTTGGCGCCAAACTCATTAATCAATGAGATGAAGCCAAATTTGTTACATAGTGGGATGAAGCTTAATTCATCAAACAGTGTGATGAAGCCAAATTCATTAAAGAATGGGATGAAGCACAGTGCATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATCTGCGCTTGCATAAGTTGGTATTTGAAGGAGATGTTTTGCCTGATGGAACTGAAGTAGCCTACTATGCTCATGGAAAGAAACTGTTGGTTGGTTACAAAAAGGGATATGGAATATTTTGTACCTGCTGCAACAGTGAGGTCAGTGCTTCTCAGTTTGAAGCTCATGCTGGTTGGGCATCTCGACGAAAGCCTTACCTGCACATTTACACATCTAATGGAATCTCACTCCATGAGTTGTCCATCTCTTTATCAAAAGACCGGAGATTTTCCAACAATGATAATGATGATCTCTGCATCATATGTGAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCTAGAGCTTTTCACATAGACTGTGTCCCTTTGCCATGCATTCCCAGTGGTACTTGGTATTGTAAGTATTGCCAGAATGTTTTCCAGAAAGATAGGCAGGGGCAACATAATAAGAATGCTCTGGCAGCTGGAAGGATTGAAGGCACTGATATTTTGGAACAGATGAACCCAAGATGTATTCGTGTTGTCAGAACTGTAGAAGTTGACCATGGTGGATGTGCCTTGTGCAGTCGTCACAATTTCAGTAAAAGCTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGATGCTTGAAGGATCATAATATGCAGAACCTTGAGGAATTGCCTGAGGGGAATTGGTTTTGTGGCACATCTTGCAATCAAATTCATTCTGCTCTGGCAGATTTAGCAGCTTGCGGGGAAAAGAGTGTCCCAGAGTCCCTTCTAAGTTTGATAAAAAAGAAGCACGAAGAGAAAAGTATAGACATTCAAGGTGACCTTGATGTTAAATGGAGGGTTATAAATTGGAAGCTAGATGATTCTGTCGAAAATAGGAAAAGGCTTTCAAAGGCTGTTGCTATCTTCCATGAAAGGTTTGATCCTATAGTTGATTCAACATCGGGCCGAGATTTCATTCCGACAATGTTGTTTGGAAGGAACATTCGGGGTCAAGACTTTAGTGGGATGTACTGTGCAGTGCTTACTGTCAATGGAGATATTGTGTGCGCTGGAGTATTTCGTGTCTTTGGGTCAGAAATTGCTGAGCTTCCATTGGTGGCAACAACTTCTGATCAACAAGGACAGGGTTATTTTCAGTGTCTATTTTCTTGTATCGAGACATTACTTGGTTCTTTGAATGTGAAAAACCTTGTCCTACCAGCTGCCGATGAAGCTGAATCGATATGGACCGGTAAATTTGGGTTTACAAAGCTAGCTCAAGATGAGATAAACAAGTATAAGAAATTTTATCGCATGATGATATTTCAAGGGACGTCGGTGTTACATAAGCCTGTTCCTGCGCTCTGA 3081 0.4499 MAKGTDSDEFVLLSRVRTGLKREFAFAMKAQSEICGASLGRTRASKNRPDPPVQTASARKRSRKTVEPKTSEDVLSEEEAKSDVVDLQSDDEPKNNHAGESESAAMLVCEEETKSDVAIENIVGEEEPKVLETVICEEEPKVLETVICEEEPKXLETVXXEEEPKVLETVISEEEPKALEIVVGEEEPKVFDSGVNEEEPVVAETLKEEVVDETAQPLGEINEESEKSVSGDKVPIGETLVLENDDDKGKKYKKRTKKWIERLPTVRRFTRSALKEKPEEANDEKNVGAVGVDDVIKRESETEASVLMTTPISGRFSNSRLRKFPSKLKDLLATGILDGLTVRYMKGSKARKNGETALQGVIRNSGILCFCESCMGIEVVTPTVFELHAGSANKRPPEYIYMDCGNGGNNLRDVMNACCDLPLESMEEAVQKLLGGFTMNKSSICLHCRGACKGVSKLLCDCCLASPPQIATASSIKISSPVQSRSPEPVMVQKSLDNEMQSNSLDNGVQPDSLNNCLAPNSLINEMKPNLLHSGMKLNSSNSVMKPNSLKNGMKHSASRGKSQGRLTRKDLRLHKLVFEGDVLPDGTEVAYYAHGKKLLVGYKKGYGIFCTCCNSEVSASQFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDRRFSNNDNDDLCIICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNVFQKDRQGQHNKNALAAGRIEGTDILEQMNPRCIRVVRTVEVDHGGCALCSRHNFSKSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCGTSCNQIHSALADLAACGEKSVPESLLSLIKKKHEEKSIDIQGDLDVKWRVINWKLDDSVENRKRLSKAVAIFHERFDPIVDSTSGRDFIPTMLFGRNIRGQDFSGMYCAVLTVNGDIVCAGVFRVFGSEIAELPLVATTSDQQGQGYFQCLFSCIETLLGSLNVKNLVLPAADEAESIWTGKFGFTKLAQDEINKYKKFYRMMIFQGTSVLHKPVPAL* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0372 1026 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 751 814 IPR013083 -
Vra4g0372 1026 ProSitePatterns Zinc finger PHD-type signature. 669 708 IPR019786 -
Vra4g0372 1026 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 912 996 IPR016181 -
Vra4g0372 1026 MobiDBLite consensus disorder prediction 60 98 - -
Vra4g0372 1026 Gene3D - 852 1021 - -
Vra4g0372 1026 MobiDBLite consensus disorder prediction 535 567 - -
Vra4g0372 1026 ProSiteProfiles Zinc finger PHD-type profile. 666 711 IPR019787 -
Vra4g0372 1026 Pfam Tify domain binding domain 360 418 IPR032308 -
Vra4g0372 1026 Pfam Tify domain binding domain 602 650 IPR032308 -
Vra4g0372 1026 SMART PHD_3 668 709 IPR001965 -
Vra4g0372 1026 SMART PHD_3 756 812 IPR001965 -
Vra4g0372 1026 PANTHER AUTOIMMUNE REGULATOR 1 1022 - -
Vra4g0372 1026 SUPERFAMILY FYVE/PHD zinc finger 750 808 IPR011011 -
Vra4g0372 1026 CDD PHD1_AIRE 668 708 - -
Vra4g0372 1026 PANTHER AUTOIMMUNE REGULATOR 1 1022 - -
Vra4g0372 1026 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 727 IPR013083 -
Vra4g0372 1026 MobiDBLite consensus disorder prediction 37 104 - -
Vra4g0372 1026 MobiDBLite consensus disorder prediction 535 561 - -
Vra4g0372 1026 SUPERFAMILY FYVE/PHD zinc finger 656 710 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0372 Vra-Chr4 6575190 6582814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0372 249 1023 PHD Transcription Factor Family AT2G36720 43.634 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0372 - - var:108333944 1791.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0372 4 6575190 6582814 Vra4g0372 4 6575190 6582814 ECH
Vra4g0372 4 6575190 6582814 Vra2g0790 2 7035852 7047941 PCT