Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0369 ATGATTTCAAGGGTCACATCTAGCTTCCAAAATCATCAAGGGCTTGAGATGTTCCCTGAGCATGAAGATTTGGTGTCACCCTCTGTGGAATCTGGCTCAGTTTCACATTCCAGTACCCTCCTCTTCAATCTCTCTATTCTCAAGGACAAGGTGAGTGAGGTGCAGACCCTAGTAGGTGTTATTCTCTCCCCAAATCAAACCCTGCCCGAGTCAACTTCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAAATCCTAGTCACTGCCTCATCAATGATGTTCGCCTGCCAACAGATGGCTCTCACAACCCCTCCAGGTACTACTAATAATAACACCACTACATGCACCCACAAATTGCACCAGCCCAACAAGTTATTGCCTCACTCAAATTTTCCCACAAATACAAGTCTGCTTGGTAACATAGCCATAGATATCAGTGACCATCATCAGGGTTGTTTATTTTCTAGCACTGAGTCAGAGGCACTGGACTGGTTTAGTGAAAGCTATAACAACAATAAGGACGATAATAGCAATAGCAATATTAGTAAGACTAAGGAAGATGATCCAGGCGTTGTAATTGGTGAAAACAAGATGATTATTAGTAGAGGTGGAGCTCCAAGGGAAGAACACGAACTTAACGAAGAAGGGTATAGTCATAGTGATATAATTGAATTGGATGCTGCGGATTTGTTGGCTAAGTACACGCACTATTGCCAAATTTGTGGGAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGACGAGTACAAGACGAATGCTGCATTGAGCAACCCAATTAAGAATAAGGGGAAGTTGGAAGAGGTTTTGATGGGTGTGAAGGCAAAGAGATATTCTTGTCCTGAAGAAGGGTGTAGGTGGAACCAAAAGCACGCCAAGTTCCAGCCATTGAAGTCGATGATTTGTGCTAAGAATCATTACAAGAGAAGCCATTGCCCCAAAATGTATGTGTGCAAGAGATGCAACCAGAAACAGTTCTCTGTGCTCTCTGATCTTAGGACACATGAGAAGCACTGCGGGGATCTCAAGTGGCAGTGCTCGTGTGGCACTTCCTTTTCTAGGAAAGACAAACTCATGGGCCATGTTTCTTTGTTCCTCGGACACCAACCAGCTACCAACAATGTTGCTCTCTCCTCATACTCTGGGAAATTGGACCACCACACATTGTAA 1209 0.445 MISRVTSSFQNHQGLEMFPEHEDLVSPSVESGSVSHSSTLLFNLSILKDKVSEVQTLVGVILSPNQTLPESTSMAISSMNSTIQEILVTASSMMFACQQMALTTPPGTTNNNTTTCTHKLHQPNKLLPHSNFPTNTSLLGNIAIDISDHHQGCLFSSTESEALDWFSESYNNNKDDNSNSNISKTKEDDPGVVIGENKMIISRGGAPREEHELNEEGYSHSDIIELDAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKNKGKLEEVLMGVKAKRYSCPEEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTSFSRKDKLMGHVSLFLGHQPATNNVALSSYSGKLDHHTL* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0369 402 ProSitePatterns Zinc finger C2H2 type domain signature. 239 259 IPR013087 -
Vra4g0369 402 PANTHER OS08G0562300 PROTEIN 4 392 - -
Vra4g0369 402 SMART c2h2final6 329 351 IPR013087 -
Vra4g0369 402 SMART c2h2final6 237 259 IPR013087 -
Vra4g0369 402 SMART c2h2final6 291 324 IPR013087 -
Vra4g0369 402 Gene3D Classic Zinc Finger 231 295 - -
Vra4g0369 402 Gene3D Classic Zinc Finger 327 377 - -
Vra4g0369 402 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 4 392 IPR044300 GO:0010044|GO:0010447
Vra4g0369 402 SUPERFAMILY beta-beta-alpha zinc fingers 235 262 IPR036236 -
Vra4g0369 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 264 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0369 Vra-Chr4 6553518 6554916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0369 26 384 C2H2 Transcription Factor Family AT5G22890 46.849 9.67e-104 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra4g0369 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0369 - - gmx:100802769 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0369 4 6553518 6554916 Vra4g0369 4 6553518 6554916 ECH
Vra4g0369 4 6553518 6554916 Vra2g0783 2 6997505 6998680 PCT