Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0368 ATGTTGTCAGAAATATCAGACATGGAAGGCATGGCCATGGAGGAACTTGTCTCATGCAACAACGATCCCACCAACATAGCCAAAGGGAAGCGGACAAAGCGCCGCCTCAGGCCTTTGTCACCTTGTGTTGTCAACGCCGTTACTGCCACGGCCGCCGCCATGACATCAAGCTGTTCCAGTGCTTCTGGCGGCGGCGGTGGGTCGTTTTCGTCTATCACCTTGGAGGAGGAAGAGGAAGACATGGCAAACTGTTTGATTCTCCTGGCACAGGGAAGAGGAGGAAGCGATCCTCTTCATCACAAGGACTTATGTGATGATGTCAAGACGGAGAAGGGTGGCAGCAAAATTGAATTTTATGTTTACGAGTGCAAAACATGCAACAGAACATTCCCTTCTTTTCAAGCACTCGGTGGGCACAGGGCGAGTCACAAGAAGCCCAAGGTTGAGGAAAAGAAATCCCCACCACCGTCTTCGTCGCCGCAACTATTTAATTTTGAAGAAACGAAAGTGAATCACATGAAGATTAGCCCTTCCGTTTCGCTTCAATTAGGGTGTGGAAACAATAGGGGTGGCTTAAATTTCCATGGGAACAAGTCCAAGATTCACGAGTGTTCCATTTGTGGGTCAGAATTCACATCAGGACAAGCATTGGGTGGCCACATGAGGAGGCATAGGTCATCTAACAACAATAATACTAATAATATCAATACAGTTGTTGTTCAGACGACGACGACGACGACGACAACTTCTGAGGGTGCCGTTGAAGTTAAGCCTCGGAGTGTTCTACAATTAGATCTGAACCTGCCGGCGCCGGAGGACGATCTCCGGGAGTCGAAGTTTCAGTTTTCGGGGAATCAGAATTCCATGATGCTGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG 909 0.4884 MLSEISDMEGMAMEELVSCNNDPTNIAKGKRTKRRLRPLSPCVVNAVTATAAAMTSSCSSASGGGGGSFSSITLEEEEEDMANCLILLAQGRGGSDPLHHKDLCDDVKTEKGGSKIEFYVYECKTCNRTFPSFQALGGHRASHKKPKVEEKKSPPPSSSPQLFNFEETKVNHMKISPSVSLQLGCGNNRGGLNFHGNKSKIHECSICGSEFTSGQALGGHMRRHRSSNNNNTNNINTVVVQTTTTTTTTSEGAVEVKPRSVLQLDLNLPAPEDDLRESKFQFSGNQNSMMLSAAPALVGCHY* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0368 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 229 IPR013087 -
Vra4g0368 302 PANTHER ZINC FINGER PROTEIN ZAT5 9 302 - -
Vra4g0368 302 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Vra4g0368 302 SUPERFAMILY beta-beta-alpha zinc fingers 120 224 IPR036236 -
Vra4g0368 302 Pfam C2H2-type zinc finger 120 146 - -
Vra4g0368 302 Pfam C2H2-type zinc finger 202 226 - -
Vra4g0368 302 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 9 302 - -
Vra4g0368 302 SMART c2h2final6 121 143 IPR013087 -
Vra4g0368 302 SMART c2h2final6 202 224 IPR013087 -
Vra4g0368 302 ProSitePatterns Zinc finger C2H2 type domain signature. 204 224 IPR013087 -
Vra4g0368 302 Gene3D Classic Zinc Finger 119 224 - -
Vra4g0368 302 MobiDBLite consensus disorder prediction 137 163 - -
Vra4g0368 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0368 Vra-Chr4 6546003 6547306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0368 21 302 C2H2 Transcription Factor Family AT2G28200 43.522 1.32e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra4g0368 zf-C2H2_6 2.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0368 - - gmx:100788646 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0368 4 6546003 6547306 Vra4g0368 4 6546003 6547306 ECH
Vra4g0368 4 6546003 6547306 Vra8g1884 8 36165974 36167589 ECH
Vra8g2121 8 39033583 39034871 Vra4g0368 4 6546003 6547306 ECH
Vra3g0454 3 5230958 5232575 Vra4g0368 4 6546003 6547306 ECH
Vra4g0368 4 6546003 6547306 Vra2g0781 2 6984796 6985989 PCT