Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0365 ATGGATGCAATTCACCAAGACACACAGGCGTACATCAATGATTTTGAGCTGCACGACTTCGTTGACAATCCAAATTTTGATCAGTTCATCAATTTGATCCGAGGGGAGAATGAAGATGCTAACTGTGACTTCGGTTCTGACCTCATCACTGATTGTTTTGTTAACAATCAGCTCCTTCCATCCCCTGCAAACCCTTTTGATCAGAACTATAACAATGCTGTGAATGTTTATGATCAGAGCTCCACATTTAGCTCCTTTTCATGCTTTGATGGGGAGATGAAGGGAGAAGGAGAAGGGGAAAGAGAAGAAGAAGAAGAAGATCACGATGGAGAGCATTCTTCTGAAACAACAACAACGACCAAGAATGATGGTTCCAAGCCCAAACTGAAAAATGACAGGTCCAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGACAAGGCTTCCATAATTGGAGACGCAGTAGCATACGTGCATGAGCTTCAAGCTCAAGCTAGGAAGCTGAAGGCTGAAGTTGCAGGACTTGAAGCATCTTTATTAGTGCGTGAAAACTATCAAGGATCAATTAACAATCCCAAAAATGTGCAAGCTGCTCGGAATAGTCATCCAATCTGCAAGAAGATCATGCAGGTGGAGATTGTGCAAGTGGAGGAAAGAGGGTATTATGCAAAAATAGTGTGCAATAAAGGAGAAGGAGTGGCTGCATCGTTGTTCAGAGCTCTTGAGTCTCTTGCAGGTTTTAGTGTTCGGAATTCAAACTTGGCTACAGTTTGTAACAGTTTTCAACTTACATTTACATTGAATATAAAAGGGTCCGAACCAGAAATTAACCTGCAAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGTTTTGAATTTGTGGCATCTTTTTCTGGTTGA 966 0.4213 MDAIHQDTQAYINDFELHDFVDNPNFDQFINLIRGENEDANCDFGSDLITDCFVNNQLLPSPANPFDQNYNNAVNVYDQSSTFSSFSCFDGEMKGEGEGEREEEEEDHDGEHSSETTTTTKNDGSKPKLKNDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVAYVHELQAQARKLKAEVAGLEASLLVRENYQGSINNPKNVQAARNSHPICKKIMQVEIVQVEERGYYAKIVCNKGEGVAASLFRALESLAGFSVRNSNLATVCNSFQLTFTLNIKGSEPEINLQNLKLWVTGALLNQGFEFVASFSG* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0365 321 Pfam Helix-loop-helix DNA-binding domain 138 181 IPR011598 GO:0046983
Vra4g0365 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Vra4g0365 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 201 IPR036638 GO:0046983
Vra4g0365 321 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 317 - -
Vra4g0365 321 Gene3D - 121 197 IPR036638 GO:0046983
Vra4g0365 321 SMART finulus 137 186 IPR011598 GO:0046983
Vra4g0365 321 MobiDBLite consensus disorder prediction 125 142 - -
Vra4g0365 321 Coils Coil 177 197 - -
Vra4g0365 321 MobiDBLite consensus disorder prediction 89 142 - -
Vra4g0365 321 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 11 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0365 Vra-Chr4 6517020 6518928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0365 12 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 53.355 1.46e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra4g0365 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0365 - - gmx:100805451 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0365 4 6517020 6518928 Vra4g0365 4 6517020 6518928 ECH
Vra4g0365 4 6517020 6518928 Vra2g0779 2 6958512 6960046 PCT