Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0357 ATGGGAAGAGCTCCTTGCTGTGACAAGGCAAATGTCAAGAGAGGACCGTGGTCACCAGAAGAAGACTCAAAGCTGAAGGATTACATAGAGAAGCATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTAAGGAGATGTGGAAAAAGTTGCAGATTGAGATGGCTTAACTATCTTAGGCCCAACATTAAGCACGGCGAATTCTCCGACGAGGAAGACAGAATAATCTGCAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTACCAGGGAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTGAAGAGGAAACTCATGGGGTTGGTTCCTGCATCTCATCAAAGAATAGCACCTTATCAACACTCCTCCCAAAACCCTCCCTCGCCATTTTCTTCTCAGACATCAATCTACAGAGACTACTGCAACAACTCTCCTTATTACATCCCAGCACCAAGCTCATCTTTCCCATGCCTTCAACAAATTTCTGTTCCTTCAAGTAATTACACAAACACAACCTCCTCTCTTCCCTTTTATCAGAACCAAGAGCCTTTGGTCGGTGTTAGTCCCATGCAGTATTACCCCACCACAGACAGTTCCATGGTTGTGTTTGGAAGTGAAACAAGCTGCAGTTCCTCTGATGGGAGCTGCAGCCAGGTGAGCCTTTGCAGAGAGATAAAACAAGAAGAAATGGGATTTCAGAATTTGATGCTTGCAGATCAGCACATGAACAAGTTGATGGTGAGTCAAGGCAACGTGAATCACGATGGAGGTGAAGAGTACGTGAAGCAATGGACAGATAAGCCAAATGGGTGGTTCTTCCAAACGCAAGAAACAGCACTGGATTATGATCTTGAGGTTATTAAGCAACTGATTAGTAGTAACAGTAGCAGTAATAATAGTAATAATGGATATTTTAGTATTGATGAAAACAAGACGGAGAAGGGAGTGTACTACAACTACTGA 999 0.4354 MGRAPCCDKANVKRGPWSPEEDSKLKDYIEKHGTGGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGLVPASHQRIAPYQHSSQNPPSPFSSQTSIYRDYCNNSPYYIPAPSSSFPCLQQISVPSSNYTNTTSSLPFYQNQEPLVGVSPMQYYPTTDSSMVVFGSETSCSSSDGSCSQVSLCREIKQEEMGFQNLMLADQHMNKLMVSQGNVNHDGGEEYVKQWTDKPNGWFFQTQETALDYDLEVIKQLISSNSSSNNSNNGYFSIDENKTEKGVYYNY* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0357 332 PANTHER OS09G0431300 PROTEIN 1 313 - -
Vra4g0357 332 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vra4g0357 332 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vra4g0357 332 SMART sant 67 115 IPR001005 -
Vra4g0357 332 SMART sant 13 64 IPR001005 -
Vra4g0357 332 PANTHER TRANSCRIPTION FACTOR RAX3 1 313 - -
Vra4g0357 332 CDD SANT 16 62 IPR001005 -
Vra4g0357 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vra4g0357 332 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vra4g0357 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vra4g0357 332 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vra4g0357 332 CDD SANT 70 113 IPR001005 -
Vra4g0357 332 Gene3D - 70 138 - -
Vra4g0357 332 Gene3D - 7 68 - -
Vra4g0357 332 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0357 Vra-Chr4 6431176 6433188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0357 1 119 MYB Transcription Factor Family AT5G57620 89.076 1.12e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra4g0357 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0357 K09422 - gmx:100796382 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0357 4 6431176 6433188 Vra4g0357 4 6431176 6433188 ECH
Vra4g0357 4 6431176 6433188 Vra2g0767 2 6813654 6815745 PCT