Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0356 ATGCAGAGATCCGGCTATGGCTCCGACGGAATATTCAGATCTCTCAGACCTTCAATCGTTTTCCCCAAACAACCCAACCTCACACTCGTTTCCCACCTCTTCAACAGAGTCGCACCGTTTCCCTCCAAACAAGCTCTTATCGATGCCGATTCTTCTCAAACCCTTTCCTTCCTACAGTTGAAGACGCTAACTGTTAAAGTCTCTCACGGCCTCCTCCGCCTCGGTGTCGCCAAAAACGACGTCGTCCTCTTCCTCGCCCCCAACGATATCCGCTACATCGTCTGCTTCCTCGCCGTCACCTCCCTCGGCGCCATCGTAACTACCGTCAACCCCGCCTACACCGCTGCCGAGGTCGCCAAACAGGCCAAAGACTCCAATCCCAAACTCGTCATCACCGTCCCCGAACTCTGGGACAAGCTCCAACACCTCAACCTCCCCGCCTTGTTCCTCCACTCCCAGGCGCACTCCCATGCGACTAGCTTCGACGCGCTCGTCCAACTCGCCGGGTCGCCTACCGAGTTTCCGAAAGTTGACGTCAAGCAGAGTGATACTGCGGTGCTGCTGTACTCCTCCGGGACCACTGGTGTGAGCAAGGGCGTGGTTCTAACGCACGGGAACTTCGTGGCGGCATCGTTGATGATTGGGTTGGACGATGATTTGGCCGGGGAGATGCATAGCGTGTTCCTCTGCGTTCTGCCGATGTTTCATGTGTTTGGCTTGACGGTGATTTCGTACGCGCAGCTTCAGAGGGGCAACGCTGTGGTGTCTTTGAAGAAGTTTGAATTTCAACTGGTTTTGAAGACGGTTGAGAAGTTTAGAGTGACGCATTTGTGGGTTGTGCCTCCGATCATCCTTGCTTTGGCCAAACATGGTTTGGTCGATAAGTATGACCTTTCCTCGCTGAAGCATATTGGTTCTGGCGCTGCTCCTCTTGGGAAAGAGCTGATGGAGGAGTGTGCTAAGCGTTTCCCTCATGCTACTGTTGCTCAGGGATATGGTATGACTGAAACTTGTGGGATTGTTTCTGTTGAGAATACAAGGATGGGGATTCGGCATAGTGGCTCTACGGGAATGCTTGTTTCGGGAGTGGAAGCTCAAATAGTTAGCGTGGATACCCTGAAGCCTCTCCCTCCTGGACAGTTGGGGGAGATATGGGTACGGGGTCCTAATATGATGCAAGGTTATCACAACAATCCCCAAGCCACAAGATTGACTAAAGATACAAAAGGGTGGGTGCATACAGGAGATCTTGGATATTTTGATGAGGAAGGGCAACTTTTTGTTGTTGACCGTATCAAAGAACTGATCAAGTATAAAGGTTTCCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCACCCTGAAATACTTGATGCTGTTGTCATCCCATATCCTGATGCTGAAGCCGGTGAGGTTCCAGTTGCCTATGTGGTTCGCTCACCACATAGTTCACTGACTGAGGAAGATGTTCAAAAGTTTATTGCTAATCAGGTAGCACCTTTCAAAAGATTACGAAGGGTGACATTCATCAATGCTGTTCCCAAGACAGCTTCGGGAAAAATTCTCCGAAGAGAGCTTATTGAGAAAGTAAGATCCAAAATATGA 1611 0.504 MQRSGYGSDGIFRSLRPSIVFPKQPNLTLVSHLFNRVAPFPSKQALIDADSSQTLSFLQLKTLTVKVSHGLLRLGVAKNDVVLFLAPNDIRYIVCFLAVTSLGAIVTTVNPAYTAAEVAKQAKDSNPKLVITVPELWDKLQHLNLPALFLHSQAHSHATSFDALVQLAGSPTEFPKVDVKQSDTAVLLYSSGTTGVSKGVVLTHGNFVAASLMIGLDDDLAGEMHSVFLCVLPMFHVFGLTVISYAQLQRGNAVVSLKKFEFQLVLKTVEKFRVTHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMEECAKRFPHATVAQGYGMTETCGIVSVENTRMGIRHSGSTGMLVSGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMQGYHNNPQATRLTKDTKGWVHTGDLGYFDEEGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRSPHSSLTEEDVQKFIANQVAPFKRLRRVTFINAVPKTASGKILRRELIEKVRSKI* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0356 536 Gene3D - 434 535 IPR045851 -
Vra4g0356 536 Gene3D - 9 433 IPR042099 -
Vra4g0356 536 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 535 - -
Vra4g0356 536 SUPERFAMILY Acetyl-CoA synthetase-like 19 534 - -
Vra4g0356 536 Pfam AMP-binding enzyme 35 438 IPR000873 -
Vra4g0356 536 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 535 - -
Vra4g0356 536 CDD 4CL 21 528 - -
Vra4g0356 536 Pfam AMP-binding enzyme C-terminal domain 447 522 IPR025110 -
Vra4g0356 536 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0356 Vra-Chr4 6420530 6424537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0356 1 536 Monolignol Biosynthesis Gene Families AT4G05160 65.809 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0356 K01904 - gmx:100797843 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0356 4 6420530 6424537 Vra4g0356 4 6420530 6424537 ECH
Vra4g0356 4 6420530 6424537 Vra2g0764 2 6784923 6788128 PCT