Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0354 ATGGTGTCTGACGCAAGCAAGAAGAAGGCTGCACAGAAGAAGGCGGCGGCGGCGGCCAAGAGAGGTGGCAAAGCGGTAGCTGCTTCATCCAAAACGTCGACCTCCGAGAAGCCAGCCGACAAGCTCGCCGACGGAATTGGGGATATTCAGATTTCCGATCGAACCTGCACCGGCGTCCTCTGCTCTCATCCTCTTTCTAGGGATATTAGGATAGAATCTCTCTCAGTTACTTTTCATGGACATGATTTGATAGTTGACTCTGAATTAGAACTAAATTATGGAAGACGTTATGGCTTGCTCGGATTAAATGGTTGTGGAAAATCTACCCTCCTTACGGCAATAGGTTGTCGAGAGCTACCTATTCCAGATCACATGGATATTTATCACCTTACCAGAGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAAATTGGAGAAAGAAGCTGAAGCTTTGGCAGCTCAGGATGATGGGGGTGGTGAAACACTTGAACGTGTTTATGAACGATTGGAAGCCTTAGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAGACCCGTGATTTTTCTGGTGGATGGAGAATGAGGATAGCTTTAGCTCGTGCTCTATTTATGAACCCGACCATTCTTTTACTTGATGAACCAACCAATCACCTCGATTTGGAGGCTTGTGTTTGGCTAGAAGAGAATTTGAAAAGGTTTGACCGCATTCTGGTTGTAGTTTCACATTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAGAAGCTGAAGCTCTATACTGGGAATTATGACCAATATGTTCAGACACGTGCTGAGCTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAGATTTCCTCCATGAAGGAATATATAGCTCGATTTGGTCATGGATCAGCCAAACTTGCACGCCAAGCCCAGAGTAAAGAGAAAACTCTAGCAAAAATGGAGCGGGGTGGACTAACAGAGAAGGTGGTAAGAGACAAAATTTTGGTATTCCGCTTTGTTGACGTGGGAAAACTTCCACCCCCTGTCCTCCAATTTGTCGAGGTGACATTTGGTTACACTACTGATAATCTGATCTACAAGAACCTTGACTTTGGGGTTGATTTAGACTCTAGGATTGCTCTGGTTGGACCCAATGGTGCTGGGAAGAGTACGTTACTGAAGCTAATGACCGGCGATCTGGTACCTGTGGATGGCATGGTTCGACGCCACAATCACCTTCGAATTGCACAATTTCACCAGCACTTGGCTGAAAAGCTAGACTTGGAATTGTCTGCTCTACAGTTTATGATAAAAGAATACCCTGGAAATGAGGAGGAGAGGATGAGAGCAGCAATTGGTAAATTTGGACTGTCGGGTAAAACGCAGGTGATGCCGATGAAGAATTTATCTGACGGGCAGAGGAGCCGCGTGATATTCGCATGGTTAGCTTATAGACAGCCTCACTTGCTACTTCTGGATGAGCCAACTAACCATTTAGATATTGAAACAATTGACTCATTGGCTGAGGCACTGAATGAATGGGACGGTGGCATGGTGCTTGTTAGTCATGATTTTAGACTCATAAATCAAGTGGCCCACGAGATATGGGTGTGCGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATCATGGACTTTAAGGAGCACTTGAGATCAAAAGCGGGTTTATCTGACTGA 1788 0.4541 MVSDASKKKAAQKKAAAAAKRGGKAVAASSKTSTSEKPADKLADGIGDIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLKLEKEAEALAAQDDGGGETLERVYERLEALDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKRFDRILVVVSHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRAELEENQMKQYKWEQEQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVEVTFGYTTDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPVDGMVRRHNHLRIAQFHQHLAEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKTQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMDFKEHLRSKAGLSD* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0354 595 Pfam ABC transporter 280 352 IPR032781 -
Vra4g0354 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 314 IPR027417 -
Vra4g0354 595 PANTHER - 1 595 - -
Vra4g0354 595 Gene3D - 69 333 IPR027417 -
Vra4g0354 595 Coils Coil 287 307 - -
Vra4g0354 595 CDD ABCF_EF-3 380 571 - -
Vra4g0354 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 69 309 IPR003439 GO:0005524
Vra4g0354 595 Pfam ABC transporter 87 241 IPR003439 GO:0005524
Vra4g0354 595 Pfam ABC transporter 396 527 IPR003439 GO:0005524
Vra4g0354 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 574 IPR027417 -
Vra4g0354 595 SMART AAA_5 93 295 IPR003593 -
Vra4g0354 595 SMART AAA_5 405 593 IPR003593 -
Vra4g0354 595 MobiDBLite consensus disorder prediction 1 41 - -
Vra4g0354 595 ProSitePatterns ABC transporters family signature. 213 227 IPR017871 GO:0005524
Vra4g0354 595 CDD ABCF_EF-3 69 286 - -
Vra4g0354 595 Gene3D - 356 593 IPR027417 -
Vra4g0354 595 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 595 - -
Vra4g0354 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 595 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0354 Vra-Chr4 6369495 6373968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0354 89 267 Calmodulin-binding Proteins AT2G36910 28.962 3.07e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0354 K06185 - gmx:100785099 1083.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0354 4 6369495 6373968 Vra4g0354 4 6369495 6373968 ECH
Vra4g0354 4 6369495 6373968 Vra2g0762 2 6752157 6755635 PCT