Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0348 ATGAATTCAATGGGTTCAGTGAATAACATAAGTGTAGTAGAGAGAGAATATGAATCTTTTTCAGTTAATGAAGGTTCTTCAATGGTGAGAAACAAGAGAGGTTCTTCCAGAGGTATGAAGAGGGACCGCCACATCAAGGTAAATGGAAGAGACCGTCGAGTTCGTCTATCAGCAATCTGTGCTGCTCGTATCTTCCAACTCACCCGTGAGCTAGGCAAGAAAACCGACGGTGAGACCATCGAATGGCTCTTACACAAGGCTGAACCTGCCATTGTGGCCGCCACTGGTACCGGCATTGTGCCTTCCATCACATCCTCGGTGGACAGTGCCGCCACCTTAATGGCCAACACCACCACAACCTTGGTGCCACTAGACACAATTGCTGCTCAGGATACCAACTTAGTCACCATTGCTGCGGTTGCAAGGACAGAACAGCCCATTCCCCCTTTCCATTTCGACTTTGAGTGGATGCAACATTCTGATTTAGGATTTTGTGACAATTAA 504 0.4722 MNSMGSVNNISVVEREYESFSVNEGSSMVRNKRGSSRGMKRDRHIKVNGRDRRVRLSAICAARIFQLTRELGKKTDGETIEWLLHKAEPAIVAATGTGIVPSITSSVDSAATLMANTTTTLVPLDTIAAQDTNLVTIAAVARTEQPIPPFHFDFEWMQHSDLGFCDN* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0348 167 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 32 118 IPR005333 GO:0003700
Vra4g0348 167 Pfam TCP family transcription factor 40 108 IPR017887 -
Vra4g0348 167 ProSiteProfiles TCP domain profile. 40 94 IPR017887 -
Vra4g0348 167 PANTHER TRANSCRIPTION FACTOR TCP16-RELATED 32 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0348 Vra-Chr4 6288644 6289147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0348 37 119 TCP Transcription Factor Family AT2G45680 66.265 3.79e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra4g0348 TCP 4.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0348 - K16221 pvu:PHAVU_005G132500g 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0348 4 6288644 6289147 Vra2g0749 2 6579858 6580361 PCT