Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0346 ATGTGCAAGACAAAGATGGCCACGAACGCCGCAAGTCCCACTCCCACACCGCGATCACAACAACGCTCCACCCAAAGCCCAACAACATCCTCCCCAAGCTCCACACTCAGGCCCAATCCTCGGCCCACCACTTCTTTCTCAGACAAACCCTCTACCTCTTACGCCTCCACCGCCAGCGCTCCCTACAGCGGCTCCACCGGCTACCGTCTCTCCTCCGACACCTCCATTGCCAGCCGCACCTCCCTCACCTCTCTTCGCGACACGCTCCCAGAAAACCCTCACATCTACGACTTCTCCGAAATCTGCGCCGCCACCAACAACTTCCTCGCCAAGCGACACTCCTCCTCCACCCCCTGCTGGCGCTGCACTCTCCGCGGAGCAGACGTCATTGTCTTCCAGCGCAAGTTCATTCGCAAACTCCAGACGAATGAGCTCCAGCAACTGCTCTCCGTCGTCTGCCGCAGCCACCACGTCAGCATCATCAAACTCCTCGGCGCCTCCGTCTCCGGCGACCACATCTACCTCGTCTACGACTTCGTCAACGGCGCCAGCCTCTCCGATTGTCTTCGCAACAAGAACAACCCGCGCTTCACCGTTCTCTCCACATGGATGTCGCGAATGCAGGTCGCCACGGATCTCGCTCACGCACTCGATTACATTCACAACAAAACCGGTTTGAACATCAATTTCGTCCACAACCGTATCAAATCTAGCGGCATCATCGTCACGGAACCTTCTTTCAACGCTAGGGTTTGCCATTTCGGCACCGCGCAGCTCTGCGGCGAAATCGACCTCGAAAACGAACAATTAGGTGAAATCAGCGAGATAGGGGAGAATTTTCCGCCGTCCCCGGCGAGATCCAGGCAATTCGAGGGCGTGCGGGGGTACATGGCGCCGGAATTTCAAGCCTCCGGCGTTGCGACTCAGAGGTCTGATATATACGCTTTCGGAGTGGTGATGTTGGAGCTCCTGTCCGGGGAGGAGCCACTGAAGTTTAAATATGACGAGAAGACGCGCGGATTTTTGAGGACATCGGTGATCGAGACGGCGAGAGGCGTGGTTGACGGCGGCGATGGTGGCGTGCAGGGGAAGCTGAGGAAGTGGGTTGATCAGAGATTGAAAGATTCGTTTCCCGTGGACGTAGCGGAGAAGCTGACACGTGTGGCGCTGGAGTGCGTACACGTGGATCCGGATAAGCGACCGAACATGGGACACGTTGCAGGGAAGATCTCGAAGTTTTATTTGAAGTCGAGGATGTGGTCGGACAGTATTAAGGTTCCTGATATCACTGTTTCGTTGGGTCCTCGTTGA 1311 0.566 MCKTKMATNAASPTPTPRSQQRSTQSPTTSSPSSTLRPNPRPTTSFSDKPSTSYASTASAPYSGSTGYRLSSDTSIASRTSLTSLRDTLPENPHIYDFSEICAATNNFLAKRHSSSTPCWRCTLRGADVIVFQRKFIRKLQTNELQQLLSVVCRSHHVSIIKLLGASVSGDHIYLVYDFVNGASLSDCLRNKNNPRFTVLSTWMSRMQVATDLAHALDYIHNKTGLNINFVHNRIKSSGIIVTEPSFNARVCHFGTAQLCGEIDLENEQLGEISEIGENFPPSPARSRQFEGVRGYMAPEFQASGVATQRSDIYAFGVVMLELLSGEEPLKFKYDEKTRGFLRTSVIETARGVVDGGDGGVQGKLRKWVDQRLKDSFPVDVAEKLTRVALECVHVDPDKRPNMGHVAGKISKFYLKSRMWSDSIKVPDITVSLGPR* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0346 436 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 436 - -
Vra4g0346 436 ProSiteProfiles Protein kinase domain profile. 68 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0346 436 Gene3D Phosphorylase Kinase; domain 1 70 179 - -
Vra4g0346 436 SUPERFAMILY Protein kinase-like (PK-like) 116 406 IPR011009 -
Vra4g0346 436 PANTHER OS09G0572100 PROTEIN 1 436 - -
Vra4g0346 436 MobiDBLite consensus disorder prediction 1 71 - -
Vra4g0346 436 Pfam Protein kinase domain 139 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0346 436 Gene3D Transferase(Phosphotransferase) domain 1 181 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0346 Vra-Chr4 6282382 6283988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0346 91 424 Receptor kinase-like Gene Family AT1G51940 31.657 7.90e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vra4g0346 Pkinase 8.8e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0346 - - gmx:100792694 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0346 4 6282382 6283988 Vra4g0346 4 6282382 6283988 ECH