Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0344 ATGAGCAGTTTAAGGCCTGAGTCTCATGTGGCACAGCAAATTCGGCGCGAAAAATTGAGAATCCAAAACAGTTCTCAACCTCTGCACGAATTTCCCAACAATCTTGAACCGTTATCCTTACAGCCGGGGTTTAATAACTTTGACCTTCTTCATGTTAGGAATGTTAGAAACGCTAACATGCTCGACGAACCGGTTGTTTATCCACCAGAAATGACAAACTTCTCCACTTCTTTGAACCCTTTGTCTACTCCAAAGAACGCTTTGGAGTATCATCAAGAAATAGGTGCAGCTGAAGCCAGTAACAGGCTGATGATGAATCAGTATGGTTCATTTTCCCATTCCATGCCCTCTATTCATTCTTCCCACAAGGAACCGTGTGAACTTCGTAATTTGGGAAATTGGAGGAACAGTGCTCCACAACAAGGATCTGATTGGTTTGCAAATTATCCAAGTAATGCCAATTCCTTTCTGTCTTCTGAGCTCAGCAATGTGTCTTCTTACAACGAACTAATGGATGTAGAGTGTAGCAATGCATCTGATGAAATCAATGGTAGAGAAATTCAAAAGCAATTAGGTGGACTGCATAATCCTCCTCCTCCTCCTCCTCCACTGTATCAAAATGCTTTGCAAGATATTGTGAAGTCTGCCTCTATCAGCGCCCACGCTAGGCAAGACATGACTTCCCTAATGCAGCAAAATGACCACAGCATTTGGGTGGGTAATGGTACTGAAGTTGAGCTTCAACAGCCGAGTTATGGAAATCAGCCAAATCCGTTGCGTTTTGGATGGACAAATCGAGCAATAGATAATATCACGAGTGATTCAATTCCTCAGAGCTTGTCCTTGTCACTTTCATCAAACGCACAACCCAAGCCTTCAGTTTCTCAACATGAGCAAGGGTCTACATCCGATGATCCTCGTTGTTTGAAGTATATGACGCCGTCTATTGTCTCTAGAGATTTTGCGAAATCACTTCAAGACACGGTGGGAATGCCTTCGAAGAGTACTATAACTTACCGAAGTGTGGGTCCCCTTGGCCCTTTTACAGGGTATGCTACTATTCTTAAGAGTTCAAGGTTCTTAAAGTCTGTCCAACAGTTGTTAGATGAGATTTTCTGTGTATCTGGTGCAAAGTTTGCGAAATCATATGATGTTTCAGAACGGGTTTCTCCAGAAGTTAGTGCTTCTACTTCTGCGGATACTGTTACTGTCAATAACACCGGTGTTACTGCAAAAGGTAGCAACTCAGGTTCTTCATCAACTATGTTGTATAATGTGTCAAAGGAAAATTGTTCTGATTTGGGAGTTGGAAGTAGCTTTGGTCTTTCTCCGCGGCCAGATTATCAACAGAAGAAAGCAAAACTGCTGTACATGCAAGAGGAGGTTACGAGGCAATGCAAGCAGTACCATCTACAAATGCAGATGGTTATTTCTTCGTTCGAGTCAGTGGCGGGTCTTAATTCTGCTACTCCTTACGTCTCCATGGCTCTTAAGTCAGTATCAAAACACTTCAGATGTTTAAAAAATTCTATCTCAGATCAGCTGAAGCTTATAAGCGAAGCCTTGGGAGAGGATGTGTCAATACCCTCTTGCAGTACTGGCAGTAAAGCTGACACTACTATGGCAAGGATAAGATGCAGCATGGACCAAAGTTTTCTAAAGAACAAATCTGGCAGAGGGAGTACTACGGATCTTCTTGATCCACAACAGCATGTGTGGAGGCCCCAGAGAGGGTTGCCAGAGCGTGCAGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACACTGATAAACACATGCTCGCTAGTCAAACAGGTCTATCACGGAATCAGGTATCAAATTGGTTCATAAATGCTCGAGTACGAGTATGGAAGCCAATGGTTGAGGAAATACACATGCTTGAAACAAAAGCAACAGGCAGCAGAGAGAAGAGTGGTAAACATGAGGGAACATCTTCTGGCCCTGAAGGTGGTGATAACAGCCAACCTAGAGTGGATAAGCCTTTGAGCAATATTGGTATGATCAATTCAATACCTGAAAACAGATTTGAGGGCATGGAAATGGAATCAAGCAATGCTGAGGAAAGAGGGTTAAGTGAAGAAGAATGGAGTCAAGAGAAAAGATCTAAATTGGAATGCCAAATGACTTCAAACAATATGGATGGTACATTGATGGGTTTTGTGCCATACCGACGTGGTGGCCTTGAGGTTGGTGGACTTGGTTCTGTGTCACTAACATTGGGTCTTAGACATGGCGTTGAAGGAGTACAACACCAACAACAATTGCAAGACGAACAGCTTCGACATCATCACCTCGGAGGGCACATGATCCGTGACTATGTGGGCTGA 2370 0.4325 MSSLRPESHVAQQIRREKLRIQNSSQPLHEFPNNLEPLSLQPGFNNFDLLHVRNVRNANMLDEPVVYPPEMTNFSTSLNPLSTPKNALEYHQEIGAAEASNRLMMNQYGSFSHSMPSIHSSHKEPCELRNLGNWRNSAPQQGSDWFANYPSNANSFLSSELSNVSSYNELMDVECSNASDEINGREIQKQLGGLHNPPPPPPPLYQNALQDIVKSASISAHARQDMTSLMQQNDHSIWVGNGTEVELQQPSYGNQPNPLRFGWTNRAIDNITSDSIPQSLSLSLSSNAQPKPSVSQHEQGSTSDDPRCLKYMTPSIVSRDFAKSLQDTVGMPSKSTITYRSVGPLGPFTGYATILKSSRFLKSVQQLLDEIFCVSGAKFAKSYDVSERVSPEVSASTSADTVTVNNTGVTAKGSNSGSSSTMLYNVSKENCSDLGVGSSFGLSPRPDYQQKKAKLLYMQEEVTRQCKQYHLQMQMVISSFESVAGLNSATPYVSMALKSVSKHFRCLKNSISDQLKLISEALGEDVSIPSCSTGSKADTTMARIRCSMDQSFLKNKSGRGSTTDLLDPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKATGSREKSGKHEGTSSGPEGGDNSQPRVDKPLSNIGMINSIPENRFEGMEMESSNAEERGLSEEEWSQEKRSKLECQMTSNNMDGTLMGFVPYRRGGLEVGGLGSVSLTLGLRHGVEGVQHQQQLQDEQLRHHHLGGHMIRDYVG* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0344 789 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 44 760 - -
Vra4g0344 789 SMART prehox3 349 513 IPR006563 -
Vra4g0344 789 SMART HOX_1 573 637 IPR001356 GO:0003677
Vra4g0344 789 SUPERFAMILY Homeodomain-like 575 640 IPR009057 -
Vra4g0344 789 Pfam Homeobox KN domain 590 629 IPR008422 GO:0003677|GO:0006355
Vra4g0344 789 MobiDBLite consensus disorder prediction 692 713 - -
Vra4g0344 789 MobiDBLite consensus disorder prediction 642 657 - -
Vra4g0344 789 MobiDBLite consensus disorder prediction 282 308 - -
Vra4g0344 789 ProSiteProfiles 'Homeobox' domain profile. 570 633 IPR001356 GO:0003677
Vra4g0344 789 CDD homeodomain 573 634 IPR001356 GO:0003677
Vra4g0344 789 Pfam Associated with HOX 354 512 IPR006563 -
Vra4g0344 789 Gene3D - 576 638 - -
Vra4g0344 789 MobiDBLite consensus disorder prediction 694 713 - -
Vra4g0344 789 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 44 760 - -
Vra4g0344 789 MobiDBLite consensus disorder prediction 642 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0344 Vra-Chr4 6236713 6243585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0344 277 643 Homeobox Transcription Factor Family AT5G02030 43.089 7.30e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vra4g0344 POX 2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0344 - - gmx:100790583 1148.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0344 4 6236713 6243585 Vra4g0344 4 6236713 6243585 ECH
Vra4g0344 4 6236713 6243585 Vra2g0745 2 6539859 6546990 PCT