Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0334 ATGATAAGTTCTATTAGTTGTTTCAGAGTCACGGTGAAGGACTGGTTGGAATTGATGAAGCCTCAATTAAATGTTGCTGTGGCTCTAGTTATTAGCTTGCTCTGTATTCAGCATTCATTTTGTGATGAACCTTCTTATACTGGACCAAACAAGTGGAAATGTAGATGCTCTTTATTACAAAGGAACCAGATATACTCTCGTGCTAATTGTTCCAAATCATGTGATTGTCATTCAGATGCTGAAGAGAGTGCATCCATATGGACATGCTTATGTGATTCAAATGGGTTTCCTCAAGTGTCGGCAGGTGGCCATAACCTTCACTGTTTTGATGCCTGCAATTGCACATGGGGATCTATCAAGATGCCACTCGGTTCAAAGAAGCAAATTTCGAGCAAGATTGTAGTAGTTATTCTATCAGTATGTGTTACATGCACAACTATTGCATTTCTTGCCTCAGTTGTATGTCAGGTCTGCCGAAGGGAGAGATGTTCTATTCAATCACCAATGATCTCATCAGATAAAGAAACAAGTTACAGTAGCACCACCAACTTAGTCAGTCATAAGACTTCGTTGCCTGTTAGTCATATTACAGGATGCTTTCAGAAGTCCTCTTTGTTGTTTGGTAGCCAAAGACAAACCTTTTATGGAAATATTATTCAATTTTCATTTGCTGAACTGGAAAATGCCACCGAAAACTTTTCAACTTCCAATCTAACTGGACTAGGTGGAAGCAGTTATGTATACCGTGGTCGGCTGAAAGATGGCAGTAATGTGGCAGTCAAGAGACTGAAAGATCAAAGAGGGCCTGAGGCAGACTCTGAATTTTTTACAGAGATTGAACTATTGTCTAGACTTCATCATTGTCATCTGGTGCCATTAGTGGGATACTGCTCAGAACTAAAAGGAAAAAATGTTCAAAGGTTGCTAGTGTTTGAATACATGACTAATGGAAATTTGAGGGACCGCTTAGACGGTGTTTTTGGAAAGAAAATGGACTGGTCAACTCGAGTTAGAATTGCATTAGGAGCAGCAAGGGGCTTGGAGTATCTTCATGAAGCAGCTGCTCCTAGAATTCTGCACAGAGACGTCAAATCAACAAACATTCTGCTGGACAAAAATTGGCAAGCAAAAATAACTGATCTCGGTATGGCTAAAAGCTTGAGGGCAGATGACCACCCCAGTCGTTCAGATTCTCCAGCAAGAATGCAGGGAACATTTGGTTATTTTGCACCTGAGTATGCAATTGTTGGGAGAGCCTCTCTTGAGTCTGATGTCTTCAGTTTTGGAGTGGTTCTTCTTGAGCTTATCAGTGGTCGGCAACCCATCCACAAATCTGCAGGCAAAGAACAAAGTCTTGTTTATTGGGCAAGTCCTCGCTTAAAGGATAGCAGGCGAGTAATAACCGAGTTGGCTGATCCACAGTTGAAAGGAAACTTCCCAGAAGAAGAGCTGCATATAATGGCATACTTAGCTAAGGAGTGCTTGCTGTTGGATCCTGACACTCGGCCAACTATGACTGAAGTTGTTCAAATTCTTTCCAGTATCTCCCCAGACAGATCTAGAAGGAGAAGAAACATTCCAGTGAGACTTTTTCAGGAACCGGAGGACTTGGAGAATCAAAGGCAAGCTCCACCAAGTATATTTCCAACTTGTAATTTATTGCCGTTAGGTGTTGACCACAATCTTAATGTTGGGAATGAAGATAAAGATGCACATACAGTTTCAAGTGAGGATATGGAGAGTTTGATCCTTTTTAGTCCAAAGGGTGAGAACTGGCATGCATCAGAGGAGGAAATGGTAGATTTAACCGAGCCTCGTTTCGAATCATTTTTCATGACAAACCCCAATTTCCCTTGA 1857 0.4141 MISSISCFRVTVKDWLELMKPQLNVAVALVISLLCIQHSFCDEPSYTGPNKWKCRCSLLQRNQIYSRANCSKSCDCHSDAEESASIWTCLCDSNGFPQVSAGGHNLHCFDACNCTWGSIKMPLGSKKQISSKIVVVILSVCVTCTTIAFLASVVCQVCRRERCSIQSPMISSDKETSYSSTTNLVSHKTSLPVSHITGCFQKSSLLFGSQRQTFYGNIIQFSFAELENATENFSTSNLTGLGGSSYVYRGRLKDGSNVAVKRLKDQRGPEADSEFFTEIELLSRLHHCHLVPLVGYCSELKGKNVQRLLVFEYMTNGNLRDRLDGVFGKKMDWSTRVRIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGMAKSLRADDHPSRSDSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIHKSAGKEQSLVYWASPRLKDSRRVITELADPQLKGNFPEEELHIMAYLAKECLLLDPDTRPTMTEVVQILSSISPDRSRRRRNIPVRLFQEPEDLENQRQAPPSIFPTCNLLPLGVDHNLNVGNEDKDAHTVSSEDMESLILFSPKGENWHASEEEMVDLTEPRFESFFMTNPNFP* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0334 618 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 20 612 - -
Vra4g0334 618 ProSiteProfiles Protein kinase domain profile. 233 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0334 618 PANTHER OS01G0253100 PROTEIN 20 612 IPR045271 GO:0004714|GO:0006468
Vra4g0334 618 Gene3D Phosphorylase Kinase; domain 1 207 313 - -
Vra4g0334 618 Gene3D Transferase(Phosphotransferase) domain 1 314 530 - -
Vra4g0334 618 CDD STKc_IRAK 240 515 - -
Vra4g0334 618 SMART serkin_6 233 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0334 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 358 370 IPR008271 GO:0004672|GO:0006468
Vra4g0334 618 Pfam Protein kinase domain 237 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0334 618 SUPERFAMILY Protein kinase-like (PK-like) 213 512 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0334 Vra-Chr4 6070049 6075342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0334 19 614 Receptor kinase-like Gene Family AT2G28250 52.874 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Vra4g0334 Pkinase 4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0334 - - gmx:100499641 1017.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0334 4 6070049 6075342 Vra2g0740 2 6409287 6416822 PCT